Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g539 ATGGCGAAGGGCAATCAACAGCAAGAGAAACGACACCGTTCCATCTTCGACCTTCCTACAACCTTCTTGTACTCCTGTCGTCTCCTTCCTTCTTCTTCTTCTTCGTCGTATTCTGCAAATCTTTTTTCAGAAACGAAGGCTGCGTCTCCAAGCTCAACTCTCGAAACCCTAGACGAGTCCAAGAAGTTGGAGCACAGTGCTAATACTTCTCTGTCCAGATGGTCCTGCAACACCTGCAAGTCCGAGTTCGACTCCCTCCAAGACCAACGCTCCCATTTCAAATCCGATGTTCATCGGTTCAATGTAAAGTTGAGCATCGCCGGAAAGGGTATTGTGAAAGAGGAAGACTTTGATGAGCTAACTGCAGATACTTTGTTCAAAGACTATGATATATCGAGTATATCAGGATCAGAAGATGAAGTTGACAAGAGATGTTGGGCCCAGAATGACATGCACAAGGGTTCAGATGACAATGTTAAACGAAAGCTATTTATTCAGCTTCAGACAGGGGAGAAAGTTTCACTTTGGAAGTGTTTAGTTTTGGATGAATCTGAAAATATTTCATATGAGAACGACCCTGGTTGTTGCATGCCATGTTTGAAAGAGAGTGATGTGATTGAGAAGTTGAAAACTGTGATCCACGAGCCTAGGGATAATACCCATTTGAGGGTTGTGTTGCTTGCTAGTGGTGGGCATTTTGCTGGCTGTGTCTTTGATGGTAACTCTGTTGTGGCTCACAGAACATTCCACAGATATGTCGTAAGGGCCAAGGCTGGTAAAAAGCAGTCATCAAAAGATGCAGGTGGCAGGGCTGCACATTCTGCTGGAGCTTCACTTCGCAGATATAACGAACTCGCTCTGAAGAAGGAAATTCAAGAATTACTTGCTTCTTGGAGGCCTTATTTTGAGGCTTCCTCCTGCATCTTCATTTATGCTCCTTCAAACAATCGTCAACTGCTTTTTAATGGGGAAAAGGCGTATTTCAGTAACCAGACTGCTGCTCGAAATGTTCCATTGACTGTTCGAAGGCCTACATTCAAGGAAGCCCAGCGTATATATAACCAATTGACACAAGTTGCCTATGATATGGATGAGACGGAATCTCCAGAAAGCATCAAAGATGATTCACTTTTAAGGTTAAGCACTATTAGCATCAACAGCCCAGAGTCCAGCAAGGTGGGCACAGAGGACAACTTGGAGAGAAGGGTAGCCACTGAAGCATGTTCAAGTAACAAAAAATCTGATGACATGCCCATATCAAGTGAGAGTGAGCATGAATTTACTGGTTCATCAACACCTTTACATGAAGCAGCAAAGTCTGGAGATTGTCATAAAGTCTTGGAACTCCTAGAGCAGGGTTTGGATCCTTGCATTATAGATGAAAGGGGGAGGACCCCATATATGCTGACAACTGAGAAGGAAGTCAGGAATACTTTTAGACGGTTCATGGCCTCCAACCTGGACAAGTGGGATTGGCATGCTGCAAGAGTGCCCAGTGCATTGACAAAGGAAATGGAGGAATCTCAAGCAGCTAAGCAGGCAGATAAAGATGCAAAGAGGAAAGCAAGATCAAAAGAGCTGAAGAAACTGCGGAAAGCAAAAGAAAAGAAGGCTCAGGCTCAGGCTGCCTTAGCCCAGAATTCCTCAACAGTTTCAGAGAATCAAGGAGCTAAGCTGGTTTCAGTTCTCAAGGGACAGCCTCAATCTAGTAGCACCATATCCAGAGAGGAGGAACTGAAGAGAGCAGCTACTGCTGAGAGGGAAAAGAGAGCAGCAGCTGCTGAGAGGAGAATAGCAGCAGCTGCATCCCTCAATGCTCAAGGGCCTGGTACAACCATTGGACCAAGTAGTTCACAACCAAAAAGTGGGATAGCATCTGACATAAACTGCTCCTACTGTTATGCATCATTAGCTGGTAAAATCCCGTTTCACAGGTATAATTACAAATATTGCAGCACAACATGCATGCATGTACACAAAGAGATACTTGAGGATGGATAA 2001 44.48 MAKGNQQQEKRHRSIFDLPTTFLYSCRLLPSSSSSSYSANLFSETKAASPSSTLETLDESKKLEHSANTSLSRWSCNTCKSEFDSLQDQRSHFKSDVHRFNVKLSIAGKGIVKEEDFDELTADTLFKDYDISSISGSEDEVDKRCWAQNDMHKGSDDNVKRKLFIQLQTGEKVSLWKCLVLDESENISYENDPGCCMPCLKESDVIEKLKTVIHEPRDNTHLRVVLLASGGHFAGCVFDGNSVVAHRTFHRYVVRAKAGKKQSSKDAGGRAAHSAGASLRRYNELALKKEIQELLASWRPYFEASSCIFIYAPSNNRQLLFNGEKAYFSNQTAARNVPLTVRRPTFKEAQRIYNQLTQVAYDMDETESPESIKDDSLLRLSTISINSPESSKVGTEDNLERRVATEACSSNKKSDDMPISSESEHEFTGSSTPLHEAAKSGDCHKVLELLEQGLDPCIIDERGRTPYMLTTEKEVRNTFRRFMASNLDKWDWHAARVPSALTKEMEESQAAKQADKDAKRKARSKELKKLRKAKEKKAQAQAALAQNSSTVSENQGAKLVSVLKGQPQSSSTISREEELKRAATAEREKRAAAAERRIAAAASLNAQGPGTTIGPSSSQPKSGIASDINCSYCYASLAGKIPFHRYNYKYCSTTCMHVHKEILEDG* 667
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 15953147 15959210 + Vvi15g539 Vvi15g539 777231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g539 666 Coils Coil 523 550 - -
Vvi15g539 666 PANTHER ANKYRIN REPEAT AND ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 6 662 - -
Vvi15g539 666 Pfam Vms1-associating treble clef domain 628 661 IPR041540 -
Vvi15g539 666 SUPERFAMILY Ankyrin repeat 431 485 IPR036770 -
Vvi15g539 666 MobiDBLite consensus disorder prediction 389 437 - -
Vvi15g539 666 Gene3D - 395 521 IPR036770 -
Vvi15g539 666 ProSiteProfiles Ankyrin repeat region circular profile. 429 455 - -
Vvi15g539 666 MobiDBLite consensus disorder prediction 394 409 - -
Vvi15g539 666 ProSiteProfiles Ankyrin repeat profile. 429 461 IPR002110 GO:0005515
Vvi15g539 666 Coils Coil 575 595 - -
Vvi15g539 666 MobiDBLite consensus disorder prediction 508 522 - -
Vvi15g539 666 MobiDBLite consensus disorder prediction 503 551 - -
Vvi15g539 666 ProSitePatterns Zinc finger C2H2 type domain signature. 76 98 IPR013087 -
Vvi15g539 666 Pfam Bacteroidetes VLRF1 release factor 224 360 IPR041175 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g539 K26089 - vvi:100254117 1195.65