Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi15g539 | ATGGCGAAGGGCAATCAACAGCAAGAGAAACGACACCGTTCCATCTTCGACCTTCCTACAACCTTCTTGTACTCCTGTCGTCTCCTTCCTTCTTCTTCTTCTTCGTCGTATTCTGCAAATCTTTTTTCAGAAACGAAGGCTGCGTCTCCAAGCTCAACTCTCGAAACCCTAGACGAGTCCAAGAAGTTGGAGCACAGTGCTAATACTTCTCTGTCCAGATGGTCCTGCAACACCTGCAAGTCCGAGTTCGACTCCCTCCAAGACCAACGCTCCCATTTCAAATCCGATGTTCATCGGTTCAATGTAAAGTTGAGCATCGCCGGAAAGGGTATTGTGAAAGAGGAAGACTTTGATGAGCTAACTGCAGATACTTTGTTCAAAGACTATGATATATCGAGTATATCAGGATCAGAAGATGAAGTTGACAAGAGATGTTGGGCCCAGAATGACATGCACAAGGGTTCAGATGACAATGTTAAACGAAAGCTATTTATTCAGCTTCAGACAGGGGAGAAAGTTTCACTTTGGAAGTGTTTAGTTTTGGATGAATCTGAAAATATTTCATATGAGAACGACCCTGGTTGTTGCATGCCATGTTTGAAAGAGAGTGATGTGATTGAGAAGTTGAAAACTGTGATCCACGAGCCTAGGGATAATACCCATTTGAGGGTTGTGTTGCTTGCTAGTGGTGGGCATTTTGCTGGCTGTGTCTTTGATGGTAACTCTGTTGTGGCTCACAGAACATTCCACAGATATGTCGTAAGGGCCAAGGCTGGTAAAAAGCAGTCATCAAAAGATGCAGGTGGCAGGGCTGCACATTCTGCTGGAGCTTCACTTCGCAGATATAACGAACTCGCTCTGAAGAAGGAAATTCAAGAATTACTTGCTTCTTGGAGGCCTTATTTTGAGGCTTCCTCCTGCATCTTCATTTATGCTCCTTCAAACAATCGTCAACTGCTTTTTAATGGGGAAAAGGCGTATTTCAGTAACCAGACTGCTGCTCGAAATGTTCCATTGACTGTTCGAAGGCCTACATTCAAGGAAGCCCAGCGTATATATAACCAATTGACACAAGTTGCCTATGATATGGATGAGACGGAATCTCCAGAAAGCATCAAAGATGATTCACTTTTAAGGTTAAGCACTATTAGCATCAACAGCCCAGAGTCCAGCAAGGTGGGCACAGAGGACAACTTGGAGAGAAGGGTAGCCACTGAAGCATGTTCAAGTAACAAAAAATCTGATGACATGCCCATATCAAGTGAGAGTGAGCATGAATTTACTGGTTCATCAACACCTTTACATGAAGCAGCAAAGTCTGGAGATTGTCATAAAGTCTTGGAACTCCTAGAGCAGGGTTTGGATCCTTGCATTATAGATGAAAGGGGGAGGACCCCATATATGCTGACAACTGAGAAGGAAGTCAGGAATACTTTTAGACGGTTCATGGCCTCCAACCTGGACAAGTGGGATTGGCATGCTGCAAGAGTGCCCAGTGCATTGACAAAGGAAATGGAGGAATCTCAAGCAGCTAAGCAGGCAGATAAAGATGCAAAGAGGAAAGCAAGATCAAAAGAGCTGAAGAAACTGCGGAAAGCAAAAGAAAAGAAGGCTCAGGCTCAGGCTGCCTTAGCCCAGAATTCCTCAACAGTTTCAGAGAATCAAGGAGCTAAGCTGGTTTCAGTTCTCAAGGGACAGCCTCAATCTAGTAGCACCATATCCAGAGAGGAGGAACTGAAGAGAGCAGCTACTGCTGAGAGGGAAAAGAGAGCAGCAGCTGCTGAGAGGAGAATAGCAGCAGCTGCATCCCTCAATGCTCAAGGGCCTGGTACAACCATTGGACCAAGTAGTTCACAACCAAAAAGTGGGATAGCATCTGACATAAACTGCTCCTACTGTTATGCATCATTAGCTGGTAAAATCCCGTTTCACAGGTATAATTACAAATATTGCAGCACAACATGCATGCATGTACACAAAGAGATACTTGAGGATGGATAA | 2001 | 44.48 | MAKGNQQQEKRHRSIFDLPTTFLYSCRLLPSSSSSSYSANLFSETKAASPSSTLETLDESKKLEHSANTSLSRWSCNTCKSEFDSLQDQRSHFKSDVHRFNVKLSIAGKGIVKEEDFDELTADTLFKDYDISSISGSEDEVDKRCWAQNDMHKGSDDNVKRKLFIQLQTGEKVSLWKCLVLDESENISYENDPGCCMPCLKESDVIEKLKTVIHEPRDNTHLRVVLLASGGHFAGCVFDGNSVVAHRTFHRYVVRAKAGKKQSSKDAGGRAAHSAGASLRRYNELALKKEIQELLASWRPYFEASSCIFIYAPSNNRQLLFNGEKAYFSNQTAARNVPLTVRRPTFKEAQRIYNQLTQVAYDMDETESPESIKDDSLLRLSTISINSPESSKVGTEDNLERRVATEACSSNKKSDDMPISSESEHEFTGSSTPLHEAAKSGDCHKVLELLEQGLDPCIIDERGRTPYMLTTEKEVRNTFRRFMASNLDKWDWHAARVPSALTKEMEESQAAKQADKDAKRKARSKELKKLRKAKEKKAQAQAALAQNSSTVSENQGAKLVSVLKGQPQSSSTISREEELKRAATAEREKRAAAAERRIAAAASLNAQGPGTTIGPSSSQPKSGIASDINCSYCYASLAGKIPFHRYNYKYCSTTCMHVHKEILEDG* | 667 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
15 | 15953147 | 15959210 | + | Vvi15g539 | Vvi15g539 | 777231 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi15g539 | 666 | Coils | Coil | 523 | 550 | - | - | |
Vvi15g539 | 666 | PANTHER | ANKYRIN REPEAT AND ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 | 6 | 662 | - | - | |
Vvi15g539 | 666 | Pfam | Vms1-associating treble clef domain | 628 | 661 | IPR041540 | - | |
Vvi15g539 | 666 | SUPERFAMILY | Ankyrin repeat | 431 | 485 | IPR036770 | - | |
Vvi15g539 | 666 | MobiDBLite | consensus disorder prediction | 389 | 437 | - | - | |
Vvi15g539 | 666 | Gene3D | - | 395 | 521 | IPR036770 | - | |
Vvi15g539 | 666 | ProSiteProfiles | Ankyrin repeat region circular profile. | 429 | 455 | - | - | |
Vvi15g539 | 666 | MobiDBLite | consensus disorder prediction | 394 | 409 | - | - | |
Vvi15g539 | 666 | ProSiteProfiles | Ankyrin repeat profile. | 429 | 461 | IPR002110 | GO:0005515 | |
Vvi15g539 | 666 | Coils | Coil | 575 | 595 | - | - | |
Vvi15g539 | 666 | MobiDBLite | consensus disorder prediction | 508 | 522 | - | - | |
Vvi15g539 | 666 | MobiDBLite | consensus disorder prediction | 503 | 551 | - | - | |
Vvi15g539 | 666 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 76 | 98 | IPR013087 | - | |
Vvi15g539 | 666 | Pfam | Bacteroidetes VLRF1 release factor | 224 | 360 | IPR041175 | - |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi15g539 | K26089 | - | vvi:100254117 | 1195.65 |