Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g561 ATGAGTTTTGGGGGTTTTCTTGACAATAGTTCTGGTGGCGGTGGTGCAAGAATCGTGGCTGATATACCTTACAGCAACAACATGGCCACTGGTGCAATCGCTCAGCCACGCCTTGTCTCTCCATCTCTTGCCAAGTCCATGTTCAGCTCGCCTGGACTCTCTCTTGCTCTCCAAACTAGTATGGAGGGTCAAGGTGAGGTGACTCGACTGGCAGAAAATTTTGAGTCCGGTGGTGGCAGAAGAAGCAGAGAAGATGAGCATGAGAGCAGATCTGGAAGTGATAACATGGACGGTGCTTCTGGGGACGATCAGGATGCTGCCGACAACCCACCAAGGAAGAAGAGATACCACCGACACACGCCTCAGCAAATCCAAGAACTTGAAGCTCTGTTCAAGGAGTGTCCTCATCCTGATGAAAAGCAAAGGTTGGAACTCAGCAGAAGGCTTAGCTTGGAGACCAGGCAAGTGAAGTTCTGGTTCCAAAATCGCCGTACCCAGATGAAGACCCAATTGGAACGACATGAGAACTCAATTCTTAGACAAGAAAATGATAAACTTCGGGCTGAAAACATGTCGATAAGGGATGCTATGAGGAACCCAATTTGCACCAACTGTGGTGGTCCGGCAATTATTGGTGACATATCTCTAGAGGAGCAGCATCTTCGGATTGAGAATGCCCGCTTAAAGGATGAATTAGATCGGGTTTGTGCGCTTGCAGGCAAGTTCTTGGGCCGTCCCATTTCATCATTGGCTTCTTCTATGGCCCCAGCAATGCCCAGCTCTAGTTTGGAACTTGGAGTTGGAAGCAATGGTGGGATTTCAAGCACATCTATGTTTCTAGAGCTTGCTTTAGCTGCTATGGATGAATTGGTTAAGATGGCTCAGACTGATGAGCCTTTATGGGTCAGGAGCTTGGAAGGGGGACGGGAAATATTGAACCTTGAGGAATACATGAGAACATTTACCCCTTGCATTGGCATGAAGCCCAGTGGCTTTGTCACCGAGTCTACAAGGGAGACTGGTATGGTAATCATCAACAGCTTGGCTCTTGTTGAGACATTAATGGACTCGAATCGATGGGCAGAGATGTTTCCATGTATGATTGCCAGAACCTCTACTACTGATGTGATATCAAGTGGCATGGGGGGGACCAGAAATGGTGCACTTCAGCTGATGCATGCTGAACTCCAAGTCCTTTCACCTTTGGTTCCTGTTCGCGAGGTAAACTTCCTCCGCTTCTGCAAGCAGCACGCCGAGGGCGTGTGGGCTGTGGTTGATGTATCCATCGATACAATTCGAGAAACATCGGTTGCACCAACATTTGTGAACTGCAGGAGGCTTCCTTCTGGCTGTGTAGTGCAAGATATGCCCAATGGGTACTCCAAGGTTACATGGGTTGAGCATGCAGAATACGATGAGAGTGCAGTCCACCAGCTCTACCGGCCACTACTTGGTTCTGGCATGGGGTTCGGTGCCCAGAGGTGGGTGGCCACCCTTCAAAGGCAGTGCGAGTGTCTCGCCATACTCATGTCCTCCACCGTGCCCACCCGGGATCACACAGCAGCAATAACTGCAGGCGGGCGGCGGAGCATGCTGAAGCTGGCCCAACGAATGACCGACAACTTCTGCGCCGGTGTCTGCGCTTCAACAGTCCACAAATGGAACAAGCTGTGCGCCGGCAACGTGGACGAAGACGTGCGAGTAATGACCAGAAAGAGCGTGGACGATCCCGGGGAGCCACCGGGCATTGTGCTGAGTGCAGCAACCTCGGTCTGGCTGCCGGTGTCTCCTCAGAGGCTCTTCGACTTCCTCCGCGATGAACGGCTGAGAAGCGAGTGGGACATCCTATCCAACGGCGGACCCATGCAGGAGATGGCCCATATCGCTAAGGGCCAAGATCATGGCAACTGCGTCTCCCTACTCAGAGCCAGTGCAATGAACGCGAACCAGAGCAGTATGCTGATTCTGCAGGAGACTTGCATCGACGCGGCTGGGTCGCTTGTGGTGTACGCGCCCGTTGACATCCCCGCCATGCACGTTGTGATGAACGGTGGAGATTCCGCCTACGTGGCTCTCCTCCCATCTGGGTTCGCCATCGTCCCTGATGGGCCTGGCTCTCGCGGGCCCAACTCTGGGGTCCACACCAACAGCGGAGGCCCAAATAGAGTCAGTGGGTCCCTTCTCACCGTGGCTTTCCAGATCCTTGTGAACAGTTTGCCTACGGCCAAGCTCACGGTAGAGTCGGTGGAGACTGTCAACAATCTCATCTCCTGCACCGTTCAGAAGATCAAGGCCGCCCTTCACTGCGAAAGCTGA 2316 52.85 MSFGGFLDNSSGGGGARIVADIPYSNNMATGAIAQPRLVSPSLAKSMFSSPGLSLALQTSMEGQGEVTRLAENFESGGGRRSREDEHESRSGSDNMDGASGDDQDAADNPPRKKRYHRHTPQQIQELEALFKECPHPDEKQRLELSRRLSLETRQVKFWFQNRRTQMKTQLERHENSILRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRVCALAGKFLGRPISSLASSMAPAMPSSSLELGVGSNGGISSTSMFLELALAAMDELVKMAQTDEPLWVRSLEGGREILNLEEYMRTFTPCIGMKPSGFVTESTRETGMVIINSLALVETLMDSNRWAEMFPCMIARTSTTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEGVWAVVDVSIDTIRETSVAPTFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESAVHQLYRPLLGSGMGFGAQRWVATLQRQCECLAILMSSTVPTRDHTAAITAGGRRSMLKLAQRMTDNFCAGVCASTVHKWNKLCAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFDFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAMNANQSSMLILQETCIDAAGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAIVPDGPGSRGPNSGVHTNSGGPNRVSGSLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALHCES* 772
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 16132616 16138896 + Vvi15g561 Vvi15g561 777253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g561 771 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG1 276 768 - -
Vvi15g561 771 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG1 58 273 - -
Vvi15g561 771 Gene3D - 99 186 - -
Vvi15g561 771 ProSiteProfiles START domain profile. 272 508 IPR002913 GO:0008289
Vvi15g561 771 CDD START_ArGLABRA2_like 277 504 - -
Vvi15g561 771 ProSitePatterns 'Homeobox' domain signature. 145 168 IPR017970 GO:0000981|GO:0006355
Vvi15g561 771 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 58 273 IPR042160 -
Vvi15g561 771 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 276 768 IPR042160 -
Vvi15g561 771 SMART HOX_1 111 174 IPR001356 GO:0003677
Vvi15g561 771 Pfam Homeodomain 113 168 IPR001356 GO:0003677
Vvi15g561 771 SUPERFAMILY Bet v1-like 534 764 - -
Vvi15g561 771 Pfam START domain 281 505 IPR002913 GO:0008289
Vvi15g561 771 MobiDBLite consensus disorder prediction 76 93 - -
Vvi15g561 771 SUPERFAMILY Homeodomain-like 96 170 IPR009057 -
Vvi15g561 771 Coils Coil 164 196 - -
Vvi15g561 771 Gene3D - 347 502 IPR023393 -
Vvi15g561 771 CDD homeodomain 112 170 IPR001356 GO:0003677
Vvi15g561 771 SMART START_1 281 505 IPR002913 GO:0008289
Vvi15g561 771 ProSiteProfiles 'Homeobox' domain profile. 110 170 IPR001356 GO:0003677
Vvi15g561 771 MobiDBLite consensus disorder prediction 71 120 - -
Vvi15g561 771 SUPERFAMILY Bet v1-like 277 505 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi2g724 Vvi15g561 ECH
Vvi15g561 Vvi16g616 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14070 PF01852 START 9.70E-57 CL0209 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g561 K09338 - vvi:100260889 1454.88