Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g565 ATGCGGGAGCCCTCGATGCGTGTGAGAGAAACGGCCGCTGAACAGCTAGAGGAGCGGCAAAGTGATTGGGCGTATTCGAAGCCTATAGTGATCCTTGATATTGTTTGGAATCTGGCGTTCGTGGTTGTGGCGATGACCGTCTTGGTCATGAGTAGAGATGAGACGCCGTCGACGCCGTTGAGATTGTGGATTATAGGGTATGGCTTGCAGTGCGTGTTGCATATGGTGTGTGTTTGTGTCGAGTATAAGAGACGGCGTCGTTTGGTGAGTTCAGGGGCGTTGGAACGCAGCGGAGGCTGGGGCAGTGGCCATTTGAGTTCGAGTTCGGGAAGTGATGAAGGGGATCCTATTGATTATAGGGTGGAAGTAAGGAATCGCGATGAAGATGAAACTAGTGTTGCTAAGCATCTGGAGTCTGCAAATACTATGTTCTCGTTTATTTGGTGGATCATTGGATTCTACTGGGTATCTGCTGGTGGCCAAGATTTGACACGTGACTCACCTCAACTTTACTGGCTCTGTATCGTATTTTTGGCATTTGATGTGTTCTTTGTTGTTATCTGTGTTGCTGTGGCCTGTGTCATTGGTATTGCTGTTTGCTGTTGTCTTCCATGTATAATAGCAATCTTATATACGGTGGCAGATCAGGAAGGTGCAACCAAGGAAGAAATCGAGAGACTTCCAAAATACAAATTCCGGAGGATTGGCGAGTCTGAGAAACTTAATGGTGAGATTCAGGAATCTTTTGGTGGGATAATGACGGAGTGCGACACTGACACACCCATGGAACATGTTATTCCCCAGGAGGATGCTGAATGTTGCATCTGCCTCTCTGCCTACGAGGATGAAACCGAGCTGCGCGAGCTCCCTTGCCGTCACCGCTTCCACTGCACCTGCATAGACAAGTGGCTATACATCAATGCCACCTGCCCTCTCTGCAAGCTGAACATACTAAAAAATGCCAGCCAAAGTGGGTGTGAAGGAGGATAA 990 48.38 MREPSMRVRETAAEQLEERQSDWAYSKPIVILDIVWNLAFVVVAMTVLVMSRDETPSTPLRLWIIGYGLQCVLHMVCVCVEYKRRRRLVSSGALERSGGWGSGHLSSSSGSDEGDPIDYRVEVRNRDEDETSVAKHLESANTMFSFIWWIIGFYWVSAGGQDLTRDSPQLYWLCIVFLAFDVFFVVICVAVACVIGIAVCCCLPCIIAILYTVADQEGATKEEIERLPKYKFRRIGESEKLNGEIQESFGGIMTECDTDTPMEHVIPQEDAECCICLSAYEDETELRELPCRHRFHCTCIDKWLYINATCPLCKLNILKNASQSGCEGG* 330
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 16165481 16170176 + Vvi15g565 Vvi15g565 777257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g565 329 MobiDBLite consensus disorder prediction 94 116 - -
Vvi15g565 329 Pfam Ring finger domain 272 314 IPR001841 -
Vvi15g565 329 SUPERFAMILY RING/U-box 263 320 - -
Vvi15g565 329 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 325 - -
Vvi15g565 329 SMART ring_2 273 313 IPR001841 -
Vvi15g565 329 CDD RING-H2_RNF111_like 272 316 - -
Vvi15g565 329 PANTHER TARGET OF ERK KINASE MPK-1 1 325 - -
Vvi15g565 329 ProSiteProfiles Zinc finger RING-type profile. 273 314 IPR001841 -
Vvi15g565 329 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 253 323 IPR013083 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g565 - - vvi:100243778 629.402