Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g596 ATGAGGCGAACCAGACAATTCATGGGCGTTGCTCCGGAGCCATATAGGTATGAGCAGCAGCAGCAGCAAAGGGCGTGGCTGGGAACGTCGGAGCCTGAAGAAGAGGCAGCTAGATCTTATGATCGAGCTGCACTGGAGCTTGGTGGCCCAGATGGAGTCACCGATTCGAGCAGGAAGCTGGAATTTGTGAACTTATCACTGAGAAATAACGAGGACGGTGATGGAGGAGGAGGATGCAGCAGCAGCGTCGGTGGTGGGGTGTGTGTTGAGAGAGAGCATATGTTTGACAAGGTCGTGACACCAAGTGATGTAGGAAAACTCAACCGCCTTGTCATACCAAAGCAGCATGCTGAAAAGTACTTTCCCCTTGACTCTTCCGCTAGCGATAAGGGCCTCCTCTTGAATTTCGAAGATCGGGACGGGAAGCCTTGGCGATTCCGATACTCCTACTGGAATAGCAGCCAAAGCTATGTGATGACCAAAGGGTGGAGCCGCTTTGTCAAGGAGAAGAAGCTTGATGCCGGTGATATAGTCTCCTTTGAGCGCGGTGTTGGAGAATCAGGTAAGGACCGTTTGTATATAGACTGGAGGCGCCGGCCTGATGCACCGGACCCCACTTCCCTCTCCCATCTACATCTTCCAACCCAGCTACCATTCTCCCAGTCCGTCCGATGGGGCAGACTATACTCACTCCCCCAATCACCGAACACCTTAGGCGGTGGTTATCATGACTACAATGCAGTGACTTCAGGTTCAGGCTCCCTATACTACCTATCATCATCATCTTCCTCGCATCAGATTGGGGCAGTGCAACAGGGAGGGGATGCTCCCATGGTTATCAACTCCGTACCGGTTGTCCACGGTAAAACAACAGCCAAGCGTCTCAGGCTATTTGGTGTAAACATGGAGTGTTCAACCCCAGATGATCACCCCGAGTGCAACATATTGCCTTCAACCGCAATACCGCATGTTACAATGGCTTCTCTCTCTCCTCATCTTCCCTCCTCTTCTCTCCCTCCTCTCCAATTAAGGCTCTTCAATGGCTCCCCGCTTCAAGCAGTTAATGTTCTTGCTGCTGCATCCTTGGGCACGCTTGCAGGTGGTGCACAGAAAGTTACAGAGCTGTAA 1128 51.95 MRRTRQFMGVAPEPYRYEQQQQQRAWLGTSEPEEEAARSYDRAALELGGPDGVTDSSRKLEFVNLSLRNNEDGDGGGGCSSSVGGGVCVEREHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSASDKGLLLNFEDRDGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFERGVGESGKDRLYIDWRRRPDAPDPTSLSHLHLPTQLPFSQSVRWGRLYSLPQSPNTLGGGYHDYNAVTSGSGSLYYLSSSSSSHQIGAVQQGGDAPMVINSVPVVHGKTTAKRLRLFGVNMECSTPDDHPECNILPSTAIPHVTMASLSPHLPSSSLPPLQLRLFNGSPLQAVNVLAAASLGTLAGGAQKVTEL* 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 16539621 16542157 - Vvi15g596 Vvi15g596 777288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g596 375 CDD B3_DNA 93 189 IPR003340 GO:0003677
Vvi15g596 375 Gene3D - 88 207 IPR015300 -
Vvi15g596 375 SUPERFAMILY DNA-binding pseudobarrel domain 92 199 IPR015300 -
Vvi15g596 375 Gene3D AP2/ERF domain 6 58 IPR036955 GO:0003700|GO:0006355
Vvi15g596 375 SUPERFAMILY DNA-binding domain 20 54 IPR016177 GO:0003677
Vvi15g596 375 ProSiteProfiles B3 DNA-binding domain profile. 95 200 IPR003340 GO:0003677
Vvi15g596 375 SMART rav1_2 6 72 IPR001471 GO:0003700|GO:0006355
Vvi15g596 375 MobiDBLite consensus disorder prediction 19 38 - -
Vvi15g596 375 Pfam B3 DNA binding domain 95 199 IPR003340 GO:0003677
Vvi15g596 375 ProSiteProfiles AP2/ERF domain profile. 1 57 IPR001471 GO:0003700|GO:0006355
Vvi15g596 375 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 73 325 IPR044800 GO:0003700
Vvi15g596 375 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR NGA2 73 325 - -
Vvi15g596 375 SMART B3_2 95 200 IPR003340 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi2g277 Vvi15g596 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14078 PF02362 B3 2.70E-29 CL0405 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g596 - - vvi:100259130 623.239