Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi15g596 | ATGAGGCGAACCAGACAATTCATGGGCGTTGCTCCGGAGCCATATAGGTATGAGCAGCAGCAGCAGCAAAGGGCGTGGCTGGGAACGTCGGAGCCTGAAGAAGAGGCAGCTAGATCTTATGATCGAGCTGCACTGGAGCTTGGTGGCCCAGATGGAGTCACCGATTCGAGCAGGAAGCTGGAATTTGTGAACTTATCACTGAGAAATAACGAGGACGGTGATGGAGGAGGAGGATGCAGCAGCAGCGTCGGTGGTGGGGTGTGTGTTGAGAGAGAGCATATGTTTGACAAGGTCGTGACACCAAGTGATGTAGGAAAACTCAACCGCCTTGTCATACCAAAGCAGCATGCTGAAAAGTACTTTCCCCTTGACTCTTCCGCTAGCGATAAGGGCCTCCTCTTGAATTTCGAAGATCGGGACGGGAAGCCTTGGCGATTCCGATACTCCTACTGGAATAGCAGCCAAAGCTATGTGATGACCAAAGGGTGGAGCCGCTTTGTCAAGGAGAAGAAGCTTGATGCCGGTGATATAGTCTCCTTTGAGCGCGGTGTTGGAGAATCAGGTAAGGACCGTTTGTATATAGACTGGAGGCGCCGGCCTGATGCACCGGACCCCACTTCCCTCTCCCATCTACATCTTCCAACCCAGCTACCATTCTCCCAGTCCGTCCGATGGGGCAGACTATACTCACTCCCCCAATCACCGAACACCTTAGGCGGTGGTTATCATGACTACAATGCAGTGACTTCAGGTTCAGGCTCCCTATACTACCTATCATCATCATCTTCCTCGCATCAGATTGGGGCAGTGCAACAGGGAGGGGATGCTCCCATGGTTATCAACTCCGTACCGGTTGTCCACGGTAAAACAACAGCCAAGCGTCTCAGGCTATTTGGTGTAAACATGGAGTGTTCAACCCCAGATGATCACCCCGAGTGCAACATATTGCCTTCAACCGCAATACCGCATGTTACAATGGCTTCTCTCTCTCCTCATCTTCCCTCCTCTTCTCTCCCTCCTCTCCAATTAAGGCTCTTCAATGGCTCCCCGCTTCAAGCAGTTAATGTTCTTGCTGCTGCATCCTTGGGCACGCTTGCAGGTGGTGCACAGAAAGTTACAGAGCTGTAA | 1128 | 51.95 | MRRTRQFMGVAPEPYRYEQQQQQRAWLGTSEPEEEAARSYDRAALELGGPDGVTDSSRKLEFVNLSLRNNEDGDGGGGCSSSVGGGVCVEREHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSASDKGLLLNFEDRDGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFERGVGESGKDRLYIDWRRRPDAPDPTSLSHLHLPTQLPFSQSVRWGRLYSLPQSPNTLGGGYHDYNAVTSGSGSLYYLSSSSSSHQIGAVQQGGDAPMVINSVPVVHGKTTAKRLRLFGVNMECSTPDDHPECNILPSTAIPHVTMASLSPHLPSSSLPPLQLRLFNGSPLQAVNVLAAASLGTLAGGAQKVTEL* | 376 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
15 | 16539621 | 16542157 | - | Vvi15g596 | Vvi15g596 | 777288 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi15g596 | 375 | CDD | B3_DNA | 93 | 189 | IPR003340 | GO:0003677 | |
Vvi15g596 | 375 | Gene3D | - | 88 | 207 | IPR015300 | - | |
Vvi15g596 | 375 | SUPERFAMILY | DNA-binding pseudobarrel domain | 92 | 199 | IPR015300 | - | |
Vvi15g596 | 375 | Gene3D | AP2/ERF domain | 6 | 58 | IPR036955 | GO:0003700|GO:0006355 | |
Vvi15g596 | 375 | SUPERFAMILY | DNA-binding domain | 20 | 54 | IPR016177 | GO:0003677 | |
Vvi15g596 | 375 | ProSiteProfiles | B3 DNA-binding domain profile. | 95 | 200 | IPR003340 | GO:0003677 | |
Vvi15g596 | 375 | SMART | rav1_2 | 6 | 72 | IPR001471 | GO:0003700|GO:0006355 | |
Vvi15g596 | 375 | MobiDBLite | consensus disorder prediction | 19 | 38 | - | - | |
Vvi15g596 | 375 | Pfam | B3 DNA binding domain | 95 | 199 | IPR003340 | GO:0003677 | |
Vvi15g596 | 375 | ProSiteProfiles | AP2/ERF domain profile. | 1 | 57 | IPR001471 | GO:0003700|GO:0006355 | |
Vvi15g596 | 375 | PANTHER | B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 | 73 | 325 | IPR044800 | GO:0003700 | |
Vvi15g596 | 375 | PANTHER | B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR NGA2 | 73 | 325 | - | - | |
Vvi15g596 | 375 | SMART | B3_2 | 95 | 200 | IPR003340 | GO:0003677 |
Event-related genes

Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
14078 | PF02362 | B3 | 2.70E-29 | CL0405 | Vvi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi15g596 | - | - | vvi:100259130 | 623.239 |