Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g605 ATGCTCTACCTTCTTACCACTCACTCTGTTCTCAGTTGCTCTGCCATTGATGGTGATGAGAGGGTGTACGCACTCACACCTGTCTCCAAATACTTTGCCAGTAATCAAGATGGAGTTTCCTTCGGCCCACTACTGGCTTTGATACAGGACAAGGTCTTCATGGATAGCTGGTCCCAACTGAAAAATGCGATTATTGAAGGAGGAATACCATTTAACAGGGTCCATGGATCTCATGCATTTGAGTACCCTGGCAAGGACCCCAGATTCAATCAGGTTTTCAACACGGCAATGTTCAACCACACAACGATAATTGTTAATAAGATCCTTGAGTCCTACAAGGGTTTTGAGCACCTTACACGGGTGGTCGATGTTGGTGGCGGTCTGGGAACCACCCTTAGCATAATCACATCCAAATACCCCCATATTGAGGCTATTAATTTTGACTTGCCTCATGTTATAGAACATGCTGTGGCGTTTCCTGGTGTGGAACACATTGGAGGGGATATGTTTGAAAGTGTTCCCAAAGGAGATGCCATTTTTATGAAGTGGATACTTCATGATTGGAGTGATGATCACTGCTTAAAGTTGTTGAAGAACTGCTACAAAGCTCTACCAGAGCATGGGAAGGTGATCATTGTGGAGGGGGTTCTTCCAGAAATACCGGAAAAGGGATCTACTGTGAAAGCTATCTGCCAAACAGATTTGATAATGTTGACTCAAAACCCTGGAGGAAAGGAGAGGACAAGGAAGGAGTTCCTGGACTTGGCAATTGGAGCTGGATTTGCTGGCATCAGATATGAATGCTATGTCTCTTGTTATTGGGTTATGGAAATCTTCATGTAA 843 44.25 MLYLLTTHSVLSCSAIDGDERVYALTPVSKYFASNQDGVSFGPLLALIQDKVFMDSWSQLKNAIIEGGIPFNRVHGSHAFEYPGKDPRFNQVFNTAMFNHTTIIVNKILESYKGFEHLTRVVDVGGGLGTTLSIITSKYPHIEAINFDLPHVIEHAVAFPGVEHIGGDMFESVPKGDAIFMKWILHDWSDDHCLKLLKNCYKALPEHGKVIIVEGVLPEIPEKGSTVKAICQTDLIMLTQNPGGKERTRKEFLDLAIGAGFAGIRYECYVSCYWVMEIFM* 281
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 16656670 16659811 + Vvi15g605 Vvi15g605 777297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g605 280 Pfam O-methyltransferase domain 57 262 IPR001077 GO:0008171
Vvi15g605 280 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 38 277 IPR029063 -
Vvi15g605 280 Gene3D Vaccinia Virus protein VP39 90 269 IPR029063 -
Vvi15g605 280 CDD AdoMet_MTases 120 213 - -
Vvi15g605 280 PANTHER CAFFEIC ACID 3-O-METHYLTRANSFERASE 1-LIKE 2 279 - -
Vvi15g605 280 Gene3D - 2 108 IPR036388 -
Vvi15g605 280 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 1 280 IPR016461 GO:0008168
Vvi15g605 280 PANTHER O-METHYLTRANSFERASE 2 279 IPR016461 GO:0008168
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi2g271 Vvi15g605 ECH
Vvi15g605 Vvi16g955 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g605 K13066 - vvi:100260786 570.852