Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g608 ATGTTACAAAGCGTGGAATCTCCACCATTTTCACCCTTTACAGAACCAAACTTTCAGGCACTTTTGAGATTACAGCACCAAAAGAAGCCTTGGGGGATGACCCACTTGACTGAGTTGGACTCTCGGATTCAGGCACGGGAGCTTGAAAGCTGCATCACCCACGACATATTGGAGATGCATTCTCCAGTCAAATCCGAGACCAAGGAGCCTCAACATCACCAGCATTCAACTCCATGTCTCGAGGGTACAAGCTCCGAGTGCAACCAGGACCAACCCAACTCAGCAGAGAATGGTTGCTTAGACACAAATTCAGGCTCTTCCCCGGCGTGGGTTCAGCCACAAACCAGGCAAAAACAGGCCCACTTGTCCAAATCCCCACCCATCACCCGGGAAAGAAGAAAGCGAAAGAGAACGCGGCCGACGAAGAACAAGGAAGAGGTGGAGAGCCAGCGTATGACCCACATTGCCGTCGAACGCAACCGGAGACGCCAAATGAACGACCATCTCAACGCCCTCCGCTCCCTCATGCCGACCTCCTACATTCAAAGGGGTGACCAAGCGTCCATTATTGGGGGTGCAATCGACTTTGTGAAAGAGCTTGAACAACTGCTTGAATCCCTACAAGCCCAAAAAAGAATGAGGAGAAGTGAAGAAGGCGGTGACGCCTCCACAAACTCCTCCTCATCCTCCCCAAAAATTGCGTCCAAAGGGTTATGCACCCAACACAGATTTGCTCCAGACGAAAGCAATTCTGCCGAGGGAGGAAGGAGCGACGAATTCACATTCACAGCGGACAACAAGTCTGCAGCGGCGGACATAGAAGTCACCGTCATTCAAACGCATGTGAATTTGAAAATTCAGTGCCCAAGAAGGCCCGGCCAGTTGCTTAAGGCCATTGTAGCCCTTGAAGATCTCAGTCTAACAGTGTTGCACCTCAACATCACCTCATTACAAAGCACAGTCCTTTACTCCTTCAATCTCAAGATAGAAGACGACTGCAAGCTAGGTTCAGCAGATGAGGTAGCAGCAGCAGTCCATCAAGTATTCAGCTTCATCAATGGCAGCAGCTGA 1071 50.51 MLQSVESPPFSPFTEPNFQALLRLQHQKKPWGMTHLTELDSRIQARELESCITHDILEMHSPVKSETKEPQHHQHSTPCLEGTSSECNQDQPNSAENGCLDTNSGSSPAWVQPQTRQKQAHLSKSPPITRERRKRKRTRPTKNKEEVESQRMTHIAVERNRRRQMNDHLNALRSLMPTSYIQRGDQASIIGGAIDFVKELEQLLESLQAQKRMRRSEEGGDASTNSSSSSPKIASKGLCTQHRFAPDESNSAEGGRSDEFTFTADNKSAAADIEVTVIQTHVNLKIQCPRRPGQLLKAIVALEDLSLTVLHLNITSLQSTVLYSFNLKIEDDCKLGSADEVAAAVHQVFSFINGSS* 357
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
15 16674192 16675872 - Vvi15g608 Vvi15g608 777300
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g608 356 MobiDBLite consensus disorder prediction 76 124 - -
Vvi15g608 356 CDD bHLH_AtFAMA_like 152 224 - -
Vvi15g608 356 SMART finulus 155 206 IPR011598 GO:0046983
Vvi15g608 356 Gene3D - 140 217 IPR036638 GO:0046983
Vvi15g608 356 Pfam Helix-loop-helix DNA-binding domain 150 201 IPR011598 GO:0046983
Vvi15g608 356 PANTHER TRANSCRIPTION FACTOR BHLH70 1 354 - -
Vvi15g608 356 MobiDBLite consensus disorder prediction 220 235 - -
Vvi15g608 356 MobiDBLite consensus disorder prediction 211 235 - -
Vvi15g608 356 PANTHER MAX DIMERIZATION, MAD 1 354 - -
Vvi15g608 356 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 149 200 IPR011598 GO:0046983
Vvi15g608 356 Coils Coil 197 217 - -
Vvi15g608 356 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 149 217 IPR036638 GO:0046983
Vvi15g608 356 MobiDBLite consensus disorder prediction 64 153 - -
       

Event-related genes


Select Gene_1 Gene_2 Event_name
Vvi2g680 Vvi15g608 ECH
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14080 PF00010 HLH 1.30E-10 No_clan Vvi TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g608 - - vvi:100248794 679.093