Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi15g608 | ATGTTACAAAGCGTGGAATCTCCACCATTTTCACCCTTTACAGAACCAAACTTTCAGGCACTTTTGAGATTACAGCACCAAAAGAAGCCTTGGGGGATGACCCACTTGACTGAGTTGGACTCTCGGATTCAGGCACGGGAGCTTGAAAGCTGCATCACCCACGACATATTGGAGATGCATTCTCCAGTCAAATCCGAGACCAAGGAGCCTCAACATCACCAGCATTCAACTCCATGTCTCGAGGGTACAAGCTCCGAGTGCAACCAGGACCAACCCAACTCAGCAGAGAATGGTTGCTTAGACACAAATTCAGGCTCTTCCCCGGCGTGGGTTCAGCCACAAACCAGGCAAAAACAGGCCCACTTGTCCAAATCCCCACCCATCACCCGGGAAAGAAGAAAGCGAAAGAGAACGCGGCCGACGAAGAACAAGGAAGAGGTGGAGAGCCAGCGTATGACCCACATTGCCGTCGAACGCAACCGGAGACGCCAAATGAACGACCATCTCAACGCCCTCCGCTCCCTCATGCCGACCTCCTACATTCAAAGGGGTGACCAAGCGTCCATTATTGGGGGTGCAATCGACTTTGTGAAAGAGCTTGAACAACTGCTTGAATCCCTACAAGCCCAAAAAAGAATGAGGAGAAGTGAAGAAGGCGGTGACGCCTCCACAAACTCCTCCTCATCCTCCCCAAAAATTGCGTCCAAAGGGTTATGCACCCAACACAGATTTGCTCCAGACGAAAGCAATTCTGCCGAGGGAGGAAGGAGCGACGAATTCACATTCACAGCGGACAACAAGTCTGCAGCGGCGGACATAGAAGTCACCGTCATTCAAACGCATGTGAATTTGAAAATTCAGTGCCCAAGAAGGCCCGGCCAGTTGCTTAAGGCCATTGTAGCCCTTGAAGATCTCAGTCTAACAGTGTTGCACCTCAACATCACCTCATTACAAAGCACAGTCCTTTACTCCTTCAATCTCAAGATAGAAGACGACTGCAAGCTAGGTTCAGCAGATGAGGTAGCAGCAGCAGTCCATCAAGTATTCAGCTTCATCAATGGCAGCAGCTGA | 1071 | 50.51 | MLQSVESPPFSPFTEPNFQALLRLQHQKKPWGMTHLTELDSRIQARELESCITHDILEMHSPVKSETKEPQHHQHSTPCLEGTSSECNQDQPNSAENGCLDTNSGSSPAWVQPQTRQKQAHLSKSPPITRERRKRKRTRPTKNKEEVESQRMTHIAVERNRRRQMNDHLNALRSLMPTSYIQRGDQASIIGGAIDFVKELEQLLESLQAQKRMRRSEEGGDASTNSSSSSPKIASKGLCTQHRFAPDESNSAEGGRSDEFTFTADNKSAAADIEVTVIQTHVNLKIQCPRRPGQLLKAIVALEDLSLTVLHLNITSLQSTVLYSFNLKIEDDCKLGSADEVAAAVHQVFSFINGSS* | 357 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
15 | 16674192 | 16675872 | - | Vvi15g608 | Vvi15g608 | 777300 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi15g608 | 356 | MobiDBLite | consensus disorder prediction | 76 | 124 | - | - | |
Vvi15g608 | 356 | CDD | bHLH_AtFAMA_like | 152 | 224 | - | - | |
Vvi15g608 | 356 | SMART | finulus | 155 | 206 | IPR011598 | GO:0046983 | |
Vvi15g608 | 356 | Gene3D | - | 140 | 217 | IPR036638 | GO:0046983 | |
Vvi15g608 | 356 | Pfam | Helix-loop-helix DNA-binding domain | 150 | 201 | IPR011598 | GO:0046983 | |
Vvi15g608 | 356 | PANTHER | TRANSCRIPTION FACTOR BHLH70 | 1 | 354 | - | - | |
Vvi15g608 | 356 | MobiDBLite | consensus disorder prediction | 220 | 235 | - | - | |
Vvi15g608 | 356 | MobiDBLite | consensus disorder prediction | 211 | 235 | - | - | |
Vvi15g608 | 356 | PANTHER | MAX DIMERIZATION, MAD | 1 | 354 | - | - | |
Vvi15g608 | 356 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 149 | 200 | IPR011598 | GO:0046983 | |
Vvi15g608 | 356 | Coils | Coil | 197 | 217 | - | - | |
Vvi15g608 | 356 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 149 | 217 | IPR036638 | GO:0046983 | |
Vvi15g608 | 356 | MobiDBLite | consensus disorder prediction | 64 | 153 | - | - |
Event-related genes

Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
14080 | PF00010 | HLH | 1.30E-10 | No_clan | Vvi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi15g608 | - | - | vvi:100248794 | 679.093 |