Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g611 ATGGTTCTGAGGGTTTTGTTAGTGGAACCTGATGACTCCACTCGTCAGATTATCGCTGCTCTTCTTCGGAAATGCAGTTACAAAGTTGCTGCTGTTTCTGATGGCTTGAAGGCATGGGAGGCACTGAAGGGGGAACCCCAAAATGTTGACCTTATATTAACAGAAGTGGAGTTGCCATCAATATCTGGATTTGCACTTCTGTCATTGATAATGGAGGATGACATTTGCAAGAAGATTCCTGTCATAATGATGTCTTCTCATGATTCAATTAGCATGGTTTTGAAATGCATGTTGAAAGGGGCCGCTGACTTTCTTGTCAAGCCTGTTAGGAAGAATGAGCTGAGGAACCTATGGCAGCATGTTTGGAGAAGGCATGCACCAACTAGTGGGCATGTGTCTCAAAATTTAAGCATTGCACAGAACAAAGTTGAAGTCAGTTCCGAAAACAATACAGCAAGCAATCACTCGAGTGATTATGTGGTTTCTGCACAGAAAAAGAAGGAATGTAGTGAGAAAGGGAGTGATGTCCAAAGCTCTAGTACAACGCCTTACTTGGAAGCTGAGAGTGCATACATGGAAAATATGCAGGGATTTTCACAGTTGAAATGCAGGAGTGTATCTAACTTGAGCAATGAGGAGATAAGGAAGCATGAAGACTGTATTGAGTTGGATAAGGAACCTGATAGGCTTGAGAGTTTAACTGGAGGAAAGATAATTACATTGGGATCAGAAGTTGCACCTGGCAATGAAGGTTATCATTCAGCTGCATTCAGATGGGAAGAAAGTCATTGTCGTGCTAAGAGAGTGACTAGTGGGGATGGTGTGGGACCTGCAAGCCATATAGAAAACACTGATATTACTGGTGAGAATCATGGTTGCAATGAAAAATGGATTGAACCTTCTAGTGGGGCCATTGACTTGATAAGCACATTTGATAATTACCCAAAGGACCGTAACCAATTTTCTAGTTCCAATGATGGCATCAGCAAGGATGGTTTTGCTCCACAGTTGGAACTTTCTTTGAGAAGATTCCAACCCTGTAGCTCAAAGAACCATGGAAGTGATGAAAGGCATACACTAAACCATTCCAACTCTTCTGCCTTTTCATGGTATAATAATGGGAAGTCATTGCAACCCCTTTTTCCAACATCGGCCATTAATTGTAGTGAACTGAAGGAGGATGCAAGTTATTCTCATGAACGTTTATTCAATCAACTCCCTGAAAGTACTGTTGGTACTTCTGAGAGGTGTGGTGCTGCACTGAGTGTTACTCAGGGAAATATGACCACTCTGGTCATGGGTCAATCTAATCAAGCAGGGGCAGCATTTCCAACCTCTCAACTTGGCCTAATTCCTGTCCAAGGGGAGAACAATTTGGAACCTATGGAGGAACTGAGTCATGGTTCTCCTGTTGCTGGTCAGAGTGCTAGTAGTAGTTTATGCAACGGTGTGGTAAGTCATCTTAGCAGCAGTGTGCATGGAGGCATTTGCAACAGAAATGATGGCAATCCCACTTCAAATGGTGCCGTTGTGAGGACTACTGCTCCTGAAAGTGTGAATGACGAAGGTCTCTCCAATAATGATGCATTGAAAGGGATGGATTCCCATCATTCCACCCAACGTGAAGCAGCTCTAATGAAGTTTAGATTGAAACGGAAAGATCGTTGCTTTGAGAAGAAGGTTCGATACCAAAGCAGGAAAAGGCTTGCAGAGCAGCGTCCCCGAGTGAAAGGACAGTTTGTTCGACAAGTGCAGACTGACACTCCAACCGCTGATGGGTAA 1782 43.49 MVLRVLLVEPDDSTRQIIAALLRKCSYKVAAVSDGLKAWEALKGEPQNVDLILTEVELPSISGFALLSLIMEDDICKKIPVIMMSSHDSISMVLKCMLKGAADFLVKPVRKNELRNLWQHVWRRHAPTSGHVSQNLSIAQNKVEVSSENNTASNHSSDYVVSAQKKKECSEKGSDVQSSSTTPYLEAESAYMENMQGFSQLKCRSVSNLSNEEIRKHEDCIELDKEPDRLESLTGGKIITLGSEVAPGNEGYHSAAFRWEESHCRAKRVTSGDGVGPASHIENTDITGENHGCNEKWIEPSSGAIDLISTFDNYPKDRNQFSSSNDGISKDGFAPQLELSLRRFQPCSSKNHGSDERHTLNHSNSSAFSWYNNGKSLQPLFPTSAINCSELKEDASYSHERLFNQLPESTVGTSERCGAALSVTQGNMTTLVMGQSNQAGAAFPTSQLGLIPVQGENNLEPMEELSHGSPVAGQSASSSLCNGVVSHLSSSVHGGICNRNDGNPTSNGAVVRTTAPESVNDEGLSNNDALKGMDSHHSTQREAALMKFRLKRKDRCFEKKVRYQSRKRLAEQRPRVKGQFVRQVQTDTPTADG* 594
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 16686269 16691805 - Vvi15g611 Vvi15g611 777303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g611 593 Gene3D - 1 199 - -
Vvi15g611 593 ProSiteProfiles Response regulatory domain profile. 4 122 IPR001789 GO:0000160
Vvi15g611 593 MobiDBLite consensus disorder prediction 269 295 - -
Vvi15g611 593 PANTHER TWO-COMPONENT RESPONSE REGULATOR 2 456 IPR045279 GO:0009736
Vvi15g611 593 PANTHER TWO-COMPONENT RESPONSE REGULATOR 457 578 IPR045279 GO:0009736
Vvi15g611 593 CDD psREC_PRR 5 108 - -
Vvi15g611 593 ProSiteProfiles CCT domain profile. 541 583 IPR010402 GO:0005515
Vvi15g611 593 Pfam CCT motif 541 583 IPR010402 GO:0005515
Vvi15g611 593 PANTHER TWO-COMPONENT RESPONSE REGULATOR-LIKE APRR3 ISOFORM X1 2 456 - -
Vvi15g611 593 PANTHER TWO-COMPONENT RESPONSE REGULATOR-LIKE APRR3 ISOFORM X1 457 578 - -
Vvi15g611 593 Pfam Response regulator receiver domain 5 116 IPR001789 GO:0000160
Vvi15g611 593 SMART REC_2 3 118 IPR001789 GO:0000160
Vvi15g611 593 MobiDBLite consensus disorder prediction 568 593 - -
Vvi15g611 593 MobiDBLite consensus disorder prediction 579 593 - -
Vvi15g611 593 SUPERFAMILY CheY-like 3 135 IPR011006 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi15g611 Vvi16g961 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14081 PF00072 Response_reg 5.60E-22 CL0304 Vvi TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g611 K12130 - vvi:100253885 1186.79