Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi15g611 | ATGGTTCTGAGGGTTTTGTTAGTGGAACCTGATGACTCCACTCGTCAGATTATCGCTGCTCTTCTTCGGAAATGCAGTTACAAAGTTGCTGCTGTTTCTGATGGCTTGAAGGCATGGGAGGCACTGAAGGGGGAACCCCAAAATGTTGACCTTATATTAACAGAAGTGGAGTTGCCATCAATATCTGGATTTGCACTTCTGTCATTGATAATGGAGGATGACATTTGCAAGAAGATTCCTGTCATAATGATGTCTTCTCATGATTCAATTAGCATGGTTTTGAAATGCATGTTGAAAGGGGCCGCTGACTTTCTTGTCAAGCCTGTTAGGAAGAATGAGCTGAGGAACCTATGGCAGCATGTTTGGAGAAGGCATGCACCAACTAGTGGGCATGTGTCTCAAAATTTAAGCATTGCACAGAACAAAGTTGAAGTCAGTTCCGAAAACAATACAGCAAGCAATCACTCGAGTGATTATGTGGTTTCTGCACAGAAAAAGAAGGAATGTAGTGAGAAAGGGAGTGATGTCCAAAGCTCTAGTACAACGCCTTACTTGGAAGCTGAGAGTGCATACATGGAAAATATGCAGGGATTTTCACAGTTGAAATGCAGGAGTGTATCTAACTTGAGCAATGAGGAGATAAGGAAGCATGAAGACTGTATTGAGTTGGATAAGGAACCTGATAGGCTTGAGAGTTTAACTGGAGGAAAGATAATTACATTGGGATCAGAAGTTGCACCTGGCAATGAAGGTTATCATTCAGCTGCATTCAGATGGGAAGAAAGTCATTGTCGTGCTAAGAGAGTGACTAGTGGGGATGGTGTGGGACCTGCAAGCCATATAGAAAACACTGATATTACTGGTGAGAATCATGGTTGCAATGAAAAATGGATTGAACCTTCTAGTGGGGCCATTGACTTGATAAGCACATTTGATAATTACCCAAAGGACCGTAACCAATTTTCTAGTTCCAATGATGGCATCAGCAAGGATGGTTTTGCTCCACAGTTGGAACTTTCTTTGAGAAGATTCCAACCCTGTAGCTCAAAGAACCATGGAAGTGATGAAAGGCATACACTAAACCATTCCAACTCTTCTGCCTTTTCATGGTATAATAATGGGAAGTCATTGCAACCCCTTTTTCCAACATCGGCCATTAATTGTAGTGAACTGAAGGAGGATGCAAGTTATTCTCATGAACGTTTATTCAATCAACTCCCTGAAAGTACTGTTGGTACTTCTGAGAGGTGTGGTGCTGCACTGAGTGTTACTCAGGGAAATATGACCACTCTGGTCATGGGTCAATCTAATCAAGCAGGGGCAGCATTTCCAACCTCTCAACTTGGCCTAATTCCTGTCCAAGGGGAGAACAATTTGGAACCTATGGAGGAACTGAGTCATGGTTCTCCTGTTGCTGGTCAGAGTGCTAGTAGTAGTTTATGCAACGGTGTGGTAAGTCATCTTAGCAGCAGTGTGCATGGAGGCATTTGCAACAGAAATGATGGCAATCCCACTTCAAATGGTGCCGTTGTGAGGACTACTGCTCCTGAAAGTGTGAATGACGAAGGTCTCTCCAATAATGATGCATTGAAAGGGATGGATTCCCATCATTCCACCCAACGTGAAGCAGCTCTAATGAAGTTTAGATTGAAACGGAAAGATCGTTGCTTTGAGAAGAAGGTTCGATACCAAAGCAGGAAAAGGCTTGCAGAGCAGCGTCCCCGAGTGAAAGGACAGTTTGTTCGACAAGTGCAGACTGACACTCCAACCGCTGATGGGTAA | 1782 | 43.49 | MVLRVLLVEPDDSTRQIIAALLRKCSYKVAAVSDGLKAWEALKGEPQNVDLILTEVELPSISGFALLSLIMEDDICKKIPVIMMSSHDSISMVLKCMLKGAADFLVKPVRKNELRNLWQHVWRRHAPTSGHVSQNLSIAQNKVEVSSENNTASNHSSDYVVSAQKKKECSEKGSDVQSSSTTPYLEAESAYMENMQGFSQLKCRSVSNLSNEEIRKHEDCIELDKEPDRLESLTGGKIITLGSEVAPGNEGYHSAAFRWEESHCRAKRVTSGDGVGPASHIENTDITGENHGCNEKWIEPSSGAIDLISTFDNYPKDRNQFSSSNDGISKDGFAPQLELSLRRFQPCSSKNHGSDERHTLNHSNSSAFSWYNNGKSLQPLFPTSAINCSELKEDASYSHERLFNQLPESTVGTSERCGAALSVTQGNMTTLVMGQSNQAGAAFPTSQLGLIPVQGENNLEPMEELSHGSPVAGQSASSSLCNGVVSHLSSSVHGGICNRNDGNPTSNGAVVRTTAPESVNDEGLSNNDALKGMDSHHSTQREAALMKFRLKRKDRCFEKKVRYQSRKRLAEQRPRVKGQFVRQVQTDTPTADG* | 594 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
15 | 16686269 | 16691805 | - | Vvi15g611 | Vvi15g611 | 777303 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi15g611 | 593 | Gene3D | - | 1 | 199 | - | - | |
Vvi15g611 | 593 | ProSiteProfiles | Response regulatory domain profile. | 4 | 122 | IPR001789 | GO:0000160 | |
Vvi15g611 | 593 | MobiDBLite | consensus disorder prediction | 269 | 295 | - | - | |
Vvi15g611 | 593 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR | 2 | 456 | IPR045279 | GO:0009736 | |
Vvi15g611 | 593 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR | 457 | 578 | IPR045279 | GO:0009736 | |
Vvi15g611 | 593 | CDD | psREC_PRR | 5 | 108 | - | - | |
Vvi15g611 | 593 | ProSiteProfiles | CCT domain profile. | 541 | 583 | IPR010402 | GO:0005515 | |
Vvi15g611 | 593 | Pfam | CCT motif | 541 | 583 | IPR010402 | GO:0005515 | |
Vvi15g611 | 593 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR-LIKE APRR3 ISOFORM X1 | 2 | 456 | - | - | |
Vvi15g611 | 593 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR-LIKE APRR3 ISOFORM X1 | 457 | 578 | - | - | |
Vvi15g611 | 593 | Pfam | Response regulator receiver domain | 5 | 116 | IPR001789 | GO:0000160 | |
Vvi15g611 | 593 | SMART | REC_2 | 3 | 118 | IPR001789 | GO:0000160 | |
Vvi15g611 | 593 | MobiDBLite | consensus disorder prediction | 568 | 593 | - | - | |
Vvi15g611 | 593 | MobiDBLite | consensus disorder prediction | 579 | 593 | - | - | |
Vvi15g611 | 593 | SUPERFAMILY | CheY-like | 3 | 135 | IPR011006 | - |
Event-related genes

Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
14081 | PF00072 | Response_reg | 5.60E-22 | CL0304 | Vvi | TR |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi15g611 | K12130 | - | vvi:100253885 | 1186.79 |