Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g624 ATGGGGAAGAAGGGAGGAAGCTCATGGTTGACTGCTGTGAAAAGGGCTTTCAGATCTCCTACTAAAGAGACTGACAAGAGGAGTGGCAGAAGAAGAGAGGAACATGACCAGGAGGAAGACGAAGAAAAGAAGAGAGAGAAGCGGAGATGGATCTTCCGGAAACCCACGAACCAAGAAACCGCATCGCCACAAACCCAGTCAAAGGTTGCAGCTTCCTTCAGCGCTGGCGGTGGCGGTGGTGTTGCACCGGTGAATGATGATGTCTCCGCTTCTGCCGCCGCCGAGCAACGCCATGCGATTGCGATGGCCGTGGCTACCGCAGCCGCCGCCGAGGCCGCCGTCGCCACCGCCCAAGCGGCAGTGGAGGTCGCTCGGCTCACCAGGCCGTCCAATCACTATGCCAAAGAAAACTACGCTGCCATTGTTATTCAGACTGCTTTCAGAGGCTATCTCGCAAAAAGAGCTCTCCGTGCGCTTAAAGGACTGGTAAAATTGCAAGCTTTAGTGAGAGGTCACAACGTCAGAAAGCAAGCAAAGATGACCCTCCGATGCATGCAGGCTCTTGTTCGAGTGCAGGCCCGAGTGCTCGATCAGCGCCTGAGACTTTCCCACGAGGGAAGTCGAAAATCCACATTCAGCGATACAAACAGTTTGTGGGAATCCCGGTATCTTCAGGACATTGCAGAGAGAAAATCAATTTCGAGAGAAGGAAGTAGCATCGCTGATGATTGGGATGAACGCCCACATACCATTGAGGAAGTGAAGGCCATGTTGCAGACCAGAAAGGAAGCTGCGTTGAAGCGTGAGAAGAACTTATCTCAGGCCTTATCCCAACAGATATGGAGAACTGGTAGGAGCCCGTCAATGGGGAATGAGGATGAGCTTGAAGAGAAACCGAAATGGCTGGATCGGTGGATGGCCACGAAGCCCTGGGAGAGCAGGGGACGAGCTTCAACTGACCAGAGAGACCCCATTAAGACTGTGGAAATTGACACCTCCCAACCTTATTCCTACTTAGCTCCTAATTTCCGAAGATCAAATCAAAACCAGTACCAACCAAACCAATTCCAAAGACCCAATTCGCATTCTGTTGCTTCTCCTCTTCATAGAGCCCACCAAAACGTATCCCACCACCAATCTCCTATCACACCCTCTCCCTCTAAAACAAGGCCTCTGCAAGTCCGGTCGGCTAGTCCTCGCTGTGGAAGAGAAGACAGAAGCCTTCACACCTCTCAAACACCCAGTTTAAGGTCTAATTACTACTACAATGGAGGATTGCATCAACAAGGAAGGGGCGCTACTACTAGTGGTGGTGGCAGTGGTGGTCCTGCATTGCCAAATTACATGGCAGCTACCGAGTCCACTAAGGCCCGGGTTCGGTCACAAAGTGCACCAAGGCAGAGACCGTCAACACCGGAGAGGGAACGGGGTGGCCCTGGCTCTGTCTCCGGCTCTGCGAGAAAACGCCTTTCCTTCCCTGCCCCGGATCCTTACAGCGGTGGAATTGGCTATGGAGGCTATGGACATAACTTGAGGAGTCCAAGTTTCAAGAGTGTGGGTGGAGGATATCTGGGGTTGGAACAACAGTCTAACTATTCTTCTTGCTGCACAGACAGTCTTGGTGGGGAGATCTCCCCTTCTTCAACCAGTGACCTTAGAAGGTGGATGAGGTGA 1674 52.33 MGKKGGSSWLTAVKRAFRSPTKETDKRSGRRREEHDQEEDEEKKREKRRWIFRKPTNQETASPQTQSKVAASFSAGGGGGVAPVNDDVSASAAAEQRHAIAMAVATAAAAEAAVATAQAAVEVARLTRPSNHYAKENYAAIVIQTAFRGYLAKRALRALKGLVKLQALVRGHNVRKQAKMTLRCMQALVRVQARVLDQRLRLSHEGSRKSTFSDTNSLWESRYLQDIAERKSISREGSSIADDWDERPHTIEEVKAMLQTRKEAALKREKNLSQALSQQIWRTGRSPSMGNEDELEEKPKWLDRWMATKPWESRGRASTDQRDPIKTVEIDTSQPYSYLAPNFRRSNQNQYQPNQFQRPNSHSVASPLHRAHQNVSHHQSPITPSPSKTRPLQVRSASPRCGREDRSLHTSQTPSLRSNYYYNGGLHQQGRGATTSGGGSGGPALPNYMAATESTKARVRSQSAPRQRPSTPERERGGPGSVSGSARKRLSFPAPDPYSGGIGYGGYGHNLRSPSFKSVGGGYLGLEQQSNYSSCCTDSLGGEISPSSTSDLRRWMR* 558
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 16814246 16816980 + Vvi15g624 Vvi15g624 777316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g624 557 ProSiteProfiles IQ motif profile. 160 187 IPR000048 GO:0005515
Vvi15g624 557 PANTHER IQ-DOMAIN 5-RELATED 1 557 - -
Vvi15g624 557 PANTHER PROTEIN IQ-DOMAIN 1-LIKE ISOFORM X1 1 557 - -
Vvi15g624 557 Gene3D - 134 189 - -
Vvi15g624 557 MobiDBLite consensus disorder prediction 349 497 - -
Vvi15g624 557 MobiDBLite consensus disorder prediction 1 75 - -
Vvi15g624 557 MobiDBLite consensus disorder prediction 312 327 - -
Vvi15g624 557 MobiDBLite consensus disorder prediction 349 394 - -
Vvi15g624 557 MobiDBLite consensus disorder prediction 454 468 - -
Vvi15g624 557 Pfam Protein of unknown function (DUF4005) 398 505 IPR025064 -
Vvi15g624 557 MobiDBLite consensus disorder prediction 312 336 - -
Vvi15g624 557 MobiDBLite consensus disorder prediction 408 436 - -
Vvi15g624 557 Pfam IQ calmodulin-binding motif 139 157 IPR000048 GO:0005515
Vvi15g624 557 Pfam IQ calmodulin-binding motif 163 179 IPR000048 GO:0005515
Vvi15g624 557 ProSiteProfiles IQ motif profile. 136 164 IPR000048 GO:0005515
Vvi15g624 557 SMART iq_5 158 179 IPR000048 GO:0005515
Vvi15g624 557 SMART iq_5 135 157 IPR000048 GO:0005515
Vvi15g624 557 MobiDBLite consensus disorder prediction 55 72 - -
Vvi15g624 557 Coils Coil 556 557 - -
Vvi15g624 557 MobiDBLite consensus disorder prediction 534 557 - -
Vvi15g624 557 MobiDBLite consensus disorder prediction 18 54 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi2g250 Vvi15g624 ECH
Vvi15g624 Vvi16g977 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g624 - - vvi:100264217 1003.43