Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g624 ATGGGGAAGAAGGGAGGAAGCTCATGGTTGACTGCTGTGAAAAGGGCTTTCAGATCTCCTACTAAAGAGACTGACAAGAGGAGTGGCAGAAGAAGAGAGGAACATGACCAGGAGGAAGACGAAGAAAAGAAGAGAGAGAAGCGGAGATGGATCTTCCGGAAACCCACGAACCAAGAAACCGCATCGCCACAAACCCAGTCAAAGGTTGCAGCTTCCTTCAGCGCTGGCGGTGGCGGTGGTGTTGCACCGGTGAATGATGATGTCTCCGCTTCTGCCGCCGCCGAGCAACGCCATGCGATTGCGATGGCCGTGGCTACCGCAGCCGCCGCCGAGGCCGCCGTCGCCACCGCCCAAGCGGCAGTGGAGGTCGCTCGGCTCACCAGGCCGTCCAATCACTATGCCAAAGAAAACTACGCTGCCATTGTTATTCAGACTGCTTTCAGAGGCTATCTCGCAAAAAGAGCTCTCCGTGCGCTTAAAGGACTGGTAAAATTGCAAGCTTTAGTGAGAGGTCACAACGTCAGAAAGCAAGCAAAGATGACCCTCCGATGCATGCAGGCTCTTGTTCGAGTGCAGGCCCGAGTGCTCGATCAGCGCCTGAGACTTTCCCACGAGGGAAGTCGAAAATCCACATTCAGCGATACAAACAGTTTGTGGGAATCCCGGTATCTTCAGGACATTGCAGAGAGAAAATCAATTTCGAGAGAAGGAAGTAGCATCGCTGATGATTGGGATGAACGCCCACATACCATTGAGGAAGTGAAGGCCATGTTGCAGACCAGAAAGGAAGCTGCGTTGAAGCGTGAGAAGAACTTATCTCAGGCCTTATCCCAACAGATATGGAGAACTGGTAGGAGCCCGTCAATGGGGAATGAGGATGAGCTTGAAGAGAAACCGAAATGGCTGGATCGGTGGATGGCCACGAAGCCCTGGGAGAGCAGGGGACGAGCTTCAACTGACCAGAGAGACCCCATTAAGACTGTGGAAATTGACACCTCCCAACCTTATTCCTACTTAGCTCCTAATTTCCGAAGATCAAATCAAAACCAGTACCAACCAAACCAATTCCAAAGACCCAATTCGCATTCTGTTGCTTCTCCTCTTCATAGAGCCCACCAAAACGTATCCCACCACCAATCTCCTATCACACCCTCTCCCTCTAAAACAAGGCCTCTGCAAGTCCGGTCGGCTAGTCCTCGCTGTGGAAGAGAAGACAGAAGCCTTCACACCTCTCAAACACCCAGTTTAAGGTCTAATTACTACTACAATGGAGGATTGCATCAACAAGGAAGGGGCGCTACTACTAGTGGTGGTGGCAGTGGTGGTCCTGCATTGCCAAATTACATGGCAGCTACCGAGTCCACTAAGGCCCGGGTTCGGTCACAAAGTGCACCAAGGCAGAGACCGTCAACACCGGAGAGGGAACGGGGTGGCCCTGGCTCTGTCTCCGGCTCTGCGAGAAAACGCCTTTCCTTCCCTGCCCCGGATCCTTACAGCGGTGGAATTGGCTATGGAGGCTATGGACATAACTTGAGGAGTCCAAGTTTCAAGAGTGTGGGTGGAGGATATCTGGGGTTGGAACAACAGTCTAACTATTCTTCTTGCTGCACAGACAGTCTTGGTGGGGAGATCTCCCCTTCTTCAACCAGTGACCTTAGAAGGTGGATGAGGTGA 1674 52.33 MGKKGGSSWLTAVKRAFRSPTKETDKRSGRRREEHDQEEDEEKKREKRRWIFRKPTNQETASPQTQSKVAASFSAGGGGGVAPVNDDVSASAAAEQRHAIAMAVATAAAAEAAVATAQAAVEVARLTRPSNHYAKENYAAIVIQTAFRGYLAKRALRALKGLVKLQALVRGHNVRKQAKMTLRCMQALVRVQARVLDQRLRLSHEGSRKSTFSDTNSLWESRYLQDIAERKSISREGSSIADDWDERPHTIEEVKAMLQTRKEAALKREKNLSQALSQQIWRTGRSPSMGNEDELEEKPKWLDRWMATKPWESRGRASTDQRDPIKTVEIDTSQPYSYLAPNFRRSNQNQYQPNQFQRPNSHSVASPLHRAHQNVSHHQSPITPSPSKTRPLQVRSASPRCGREDRSLHTSQTPSLRSNYYYNGGLHQQGRGATTSGGGSGGPALPNYMAATESTKARVRSQSAPRQRPSTPERERGGPGSVSGSARKRLSFPAPDPYSGGIGYGGYGHNLRSPSFKSVGGGYLGLEQQSNYSSCCTDSLGGEISPSSTSDLRRWMR* 558
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 16814246 16816980 + Vvi15g624 Vvi15g624 777316

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g624 557 ProSiteProfiles IQ motif profile. 160 187 IPR000048 GO:0005515
Vvi15g624 557 PANTHER IQ-DOMAIN 5-RELATED 1 557 - -
Vvi15g624 557 PANTHER PROTEIN IQ-DOMAIN 1-LIKE ISOFORM X1 1 557 - -
Vvi15g624 557 Gene3D - 134 189 - -
Vvi15g624 557 MobiDBLite consensus disorder prediction 349 497 - -
Vvi15g624 557 MobiDBLite consensus disorder prediction 1 75 - -
Vvi15g624 557 MobiDBLite consensus disorder prediction 312 327 - -
Vvi15g624 557 MobiDBLite consensus disorder prediction 349 394 - -
Vvi15g624 557 MobiDBLite consensus disorder prediction 454 468 - -
Vvi15g624 557 Pfam Protein of unknown function (DUF4005) 398 505 IPR025064 -
Vvi15g624 557 MobiDBLite consensus disorder prediction 312 336 - -
Vvi15g624 557 MobiDBLite consensus disorder prediction 408 436 - -
Vvi15g624 557 Pfam IQ calmodulin-binding motif 139 157 IPR000048 GO:0005515
Vvi15g624 557 Pfam IQ calmodulin-binding motif 163 179 IPR000048 GO:0005515
Vvi15g624 557 ProSiteProfiles IQ motif profile. 136 164 IPR000048 GO:0005515
Vvi15g624 557 SMART iq_5 158 179 IPR000048 GO:0005515
Vvi15g624 557 SMART iq_5 135 157 IPR000048 GO:0005515
Vvi15g624 557 MobiDBLite consensus disorder prediction 55 72 - -
Vvi15g624 557 Coils Coil 556 557 - -
Vvi15g624 557 MobiDBLite consensus disorder prediction 534 557 - -
Vvi15g624 557 MobiDBLite consensus disorder prediction 18 54 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g624 - - - vvi:100264217 1003.43
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi2g250 Vvi15g624 ECH
Vvi15g624 Vvi16g977 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi15g624 . . . . . . Bma04g00927 . . Cmo17g00478 . . . . . . . . . . . . . . . . . . . . . . . Cone11ag0521 Cone18ag0985 . . . . . . . . . Bpe04g00965 . . . . . . Cma17g00507 . Car17g00469 . Cpe12g00436 . . . . . . . Cla06g00255 Cam06g0278 Cec06g0277 Cco06g0276 Clacu06g0268 Cmu06g0268 Cre06g1039 . . . Cme11g02263
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi13g474 ECH 107 328 IQD Protein Family AT3G09710 56.4 1.8e-59 227.3
Vvi8g606 ECH 1 289 IQD Protein Family AT5G03040 56.6 1.1e-72 271.2
Vvi13g474 ECH 1 299 IQD Protein Family AT5G03040 53.0 2.1e-68 256.9
Vvi13g474 ECH 1 309 IQD Protein Family AT3G52290 59.5 1.5e-79 293.9
Vvi8g606 ECH 6 289 IQD Protein Family AT3G52290 56.4 3.7e-75 279.3
Vvi13g474 ECH 96 310 IQD Protein Family AT2G26410 54.6 1.6e-48 191.0
Vvi6g808 . 1 418 IQD Protein Family AT3G22190 60.9 8.6e-109 391.0
Vvi4g85 . 1 390 IQD Protein Family AT2G26180 60.9 5.5e-116 414.8
Vvi19g140 ECH 1 243 IQD Protein Family AT3G15050 53.5 7.0e-61 231.1
Vvi10g183 ECH 67 264 IQD Protein Family AT3G15050 56.7 3.4e-55 212.2
Vvi15g624 ECH 1 558 IQD Protein Family AT4G00820 55.5 4.2e-129 458.8
Vvi15g624 ECH 1 558 IQD Protein Family AT1G01110 51.0 1.2e-120 430.6
Vvi9g268 ECH 1 373 IQD Protein Family AT3G16490 57.3 5.0e-79 292.0
Vvi11g260 ECH 1 395 IQD Protein Family AT3G16490 51.0 2.1e-69 260.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002938 1 3 2 3 3 1 2 1 1 1 1 1 2 2 2 2 1 3 2 2 2 2 2 2 2 1 1 1 2 3 54