Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g629 ATGAAGGTTCCGGCGACGAGGACGCGTGTCGGGAGATACGAAATCGGTAAAACCTTGGGTGAGGGGAGCTTCGCCAAGGTCAAGTACGCTCGCAACTCCGACACCGGCGATAGCGTCGCCATCAAGGTGCTCGACCGCGATCATGTTCTCCGGCACAAGATGGTGGAACAGATAAAAAGAGAGATATCGACAATGAAGCTGATTAAGCATCCGAATGTTGTGACGATCTTCGAGGTTATGGCGAGCAAAACAAAGATCTACATTGTCGTTGAGTTTGTTGACGGAGGAGAGCTCTTTGACAGAATTGCCAAGAATGGGAGACTTAAAGAGGATGAAGCCAGGAGATACTTCCAGCAGCTCATTAATGCTGTAGATTATTGCCACAGTAGAGGCGTGTACCATAGAGATTTGAAGCCCGAGAATTTACTTCTGGATTCATACGGTGTTCTTAAAATATCAGACTTTGGATTGAGTGCCCTTTCACAGCAAGTGAGGGAAGATGGGCTGTTTCACACTGCCTGTGGGACGCCAAATTATGTTGCTCCTGAGGTTCTCAATAATAAAGGATATGATGGTGCATCAGCTGATATATGGTCTTGTGGGGTCATTCTATTTGTACTTCTGGCTGGGTACTTGCCTTTTGATGAAGTAAGCCTCATGGCTTTGTATAAAAAGATCTGCAAGGCTGATTTCTCATGTCCATCATGGTTATCACCTGGTGCAAAGAAGCTGATAAACCGTATTCTTGATCCCAATCCTGTAACTCGGATAACAATTCCTGAAATCTTGGAAGATGGATGGTTCAAGAAAGGGTACCAGCCAACATGTTTTCAGCAGGAAGAGGATGTGAATGTTGATGATGTGGATGCTGCTTTCAATAATTCAGAGGAAAATCTTGTGACAGAAAGGAAAGAAAAACCTGTCTCCATGAATGCCTTCGAGCTTATTTCTAGGTCTCAGAGTTTCAATCTTGAAAACTTGTTCGGGAAGCAGGCGGGTCTTGTGAAGCGAGAGACAAGTTTCACTTCCCAGCGCCCTGCCCATGAGATTATGTCTAAAATTGAGGAAACTGCAAAGCCTCTAGGTTTCAACGTTCGCAAGCAAAACTACAAGATGAAGTTGCAAGGTGACAAAACTGGACGGAAGGGTCATCTCTCTGTAGCTACTGAGGTGTTTGAGGTGGCTCCCTCCTTGCACATGGTGGAGCTTCGGAAAACTGGTGGTGACACACTGGAGTTCCACAAGTTCTACAAAAGCTTCTCTTCAGGATTAAAAGATATAGTCTGGAAATCAGAAGCGAATACTGAAGAATTGAGGTCATAG 1323 45.05 MKVPATRTRVGRYEIGKTLGEGSFAKVKYARNSDTGDSVAIKVLDRDHVLRHKMVEQIKREISTMKLIKHPNVVTIFEVMASKTKIYIVVEFVDGGELFDRIAKNGRLKEDEARRYFQQLINAVDYCHSRGVYHRDLKPENLLLDSYGVLKISDFGLSALSQQVREDGLFHTACGTPNYVAPEVLNNKGYDGASADIWSCGVILFVLLAGYLPFDEVSLMALYKKICKADFSCPSWLSPGAKKLINRILDPNPVTRITIPEILEDGWFKKGYQPTCFQQEEDVNVDDVDAAFNNSEENLVTERKEKPVSMNAFELISRSQSFNLENLFGKQAGLVKRETSFTSQRPAHEIMSKIEETAKPLGFNVRKQNYKMKLQGDKTGRKGHLSVATEVFEVAPSLHMVELRKTGGDTLEFHKFYKSFSSGLKDIVWKSEANTEELRS* 441
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 16877121 16882572 - Vvi15g629 Vvi15g629 777321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g629 440 PANTHER - 6 432 - -
Vvi15g629 440 ProSiteProfiles NAF domain profile. 305 329 IPR018451 GO:0007165
Vvi15g629 440 Gene3D Transferase(Phosphotransferase) domain 1 93 297 - -
Vvi15g629 440 SMART serkin_6 13 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi15g629 440 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 3 6 432 - -
Vvi15g629 440 Gene3D Phosphorylase Kinase; domain 1 2 92 - -
Vvi15g629 440 Pfam NAF domain 307 367 IPR004041 GO:0007165
Vvi15g629 440 ProSitePatterns Serine/Threonine protein kinases active-site signature. 132 144 IPR008271 GO:0004672|GO:0006468
Vvi15g629 440 ProSiteProfiles Protein kinase domain profile. 13 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi15g629 440 CDD STKc_SnRK3 12 267 - -
Vvi15g629 440 SUPERFAMILY Protein kinase-like (PK-like) 10 288 IPR011009 -
Vvi15g629 440 ProSitePatterns Protein kinases ATP-binding region signature. 19 42 IPR017441 GO:0005524
Vvi15g629 440 Pfam Protein kinase domain 13 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi15g629 440 CDD CIPK_C 311 426 - -
Vvi15g629 440 Gene3D Kinase associated domain 1, KA1 304 430 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76245 PF00069 Pkinase 2.00E-73 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g629 - - vvi:100254007 816.994