Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g660 ATGAAAGAAAAGGAGAATAGTATCGGAGAAGCCAAGGACATGGAAGAGGCGATATCGATTTCGATAAACTCTGATCATACTTGTTCTAAGCCTGTGTTGGAGAGGAAGGCAAGGCCCCAGAAGGATCAGGCTGTGAATTGTCCAAGATGTAGCTCAACCAACACCAAGTTCTGTTACTACAACAACTATAGTCTCACTCAGCCAAGGTACTTCTGCAAAACTTGTAGAAGGTATTGGACTGAAGGAGGAACTCTGAGGAATGTCCCTGTTGGAGGAGGTTCAAGGAAGAACAAGAGATCTATTACTACTTCTTCTTCTTTATCTTCTTCATTGACATCTTCATCCTCATTCAAAACCCATCTTCCTGATCTGAACCCTCCAATTCTCTCCCACTTTTCCTCTGAAAACCCTAGGATCCATGAACCCCATGATCTCAACTTGGCTTTTCCACTTCCACAGTACTACCATGGCATCTCTCAGTTTGCTGAACTTCTCAAGACTGGGATCACTTCCAGGGGGTTGAGTTCCTTTGTCCCAGCACCGATGCCGGATTCATCAAGCACCCTATTCACATCAGGGTTTCCTCTGCAAGAATTCAAAGTACCCCACCTCAGTTTTTCTGCTCATCTACATGGGGTTGATCCTCAGCAGAATATGAGTACTACCGGAAGGGTTTTGTTTCCTTTTGGAGAAGTGAAACAGCTCCCAGCCACAACAAGCACTGGAGTTGATCATGATTGTAGTGGTAATAATAAGGGACAAGGGAGTCCAGCTACTGCTGCATACTGGAATAATGGCATTACTAGTGTCATGAATTTAATAGAAAAATGGAGTCTCTCACAATTAGTCACAACCAACCTACATTTCATGGAGGTCCTTTTCCTCTCCATTTAG 894 43.85 MKEKENSIGEAKDMEEAISISINSDHTCSKPVLERKARPQKDQAVNCPRCSSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGTLRNVPVGGGSRKNKRSITTSSSLSSSLTSSSSFKTHLPDLNPPILSHFSSENPRIHEPHDLNLAFPLPQYYHGISQFAELLKTGITSRGLSSFVPAPMPDSSSTLFTSGFPLQEFKVPHLSFSAHLHGVDPQQNMSTTGRVLFPFGEVKQLPATTSTGVDHDCSGNNKGQGSPATAAYWNNGITSVMNLIEKWSLSQLVTTNLHFMEVLFLSI* 298
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 17188041 17190428 - Vvi15g660 Vvi15g660 777352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g660 297 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN-RELATED 165 265 - -
Vvi15g660 297 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN-RELATED 23 132 - -
Vvi15g660 297 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 23 132 IPR045174 GO:0003700|GO:0006355
Vvi15g660 297 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 165 265 IPR045174 GO:0003700|GO:0006355
Vvi15g660 297 ProSiteProfiles Zinc finger Dof-type profile. 45 99 IPR003851 GO:0003677|GO:0006355
Vvi15g660 297 ProSitePatterns Zinc finger Dof-type signature. 47 83 IPR003851 GO:0003677|GO:0006355
Vvi15g660 297 MobiDBLite consensus disorder prediction 96 116 - -
Vvi15g660 297 Pfam Dof domain, zinc finger 42 99 IPR003851 GO:0003677|GO:0006355
Vvi15g660 297 MobiDBLite consensus disorder prediction 86 116 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi2g209 Vvi15g660 ECH
Vvi15g660 Vvi16g1009 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14085 PF02701 zf-Dof 3.40E-33 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g660 - - vvi:100263781 513.457