Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g67 ATGTATCCGCAAAAGGGAAATAGGACAAAGGATCAATTCACATTTTCTTGCCGTGTGAAGCATGCAGGGATGGAAAGCCTCCTCCTCATCACTTTACCCTTGCTCGTAATTTCACAAAATCTGGATGCTGAACTATCCATTCTGTTGCAAGTCAAACAACAATTGGGCAATCCACCCTCTATCCAATCGTGGAACTCATCATCCTCACCTTGTGATTGGCCGGAAATTACATGCACCGACAATACCATCACTGAAATTTCACTCTACGGCAAGAGCATCACTCACAAAATTCCTGCCAGAATTTGTGACCTCAAGAACCTTATGGTACTTGACGTCTCCAACAATTACATTCCCGGCGAGTTCCCGGATATTCTCAATTGTTCTAAGCTCGAATATCTCCTCTTGTTGCAAAACAACTTCGTGGGTCCAATTCCAGCTAATATTGATCGGCTTTCACGTCTCCGGTACCTAGACCTTACCGCAAACAACTTCTCTGGAGATATTCCCGCAGTAATTGGGCAACTACGGGAGCTGTTCTACTTGTCTCTGGTTCAAAATGAGTTCAACGGCACCTGGCCAAAGGAGATTGGTAATTTGGCGAATCTTCAACACTTGGCCATGGCCTATAATGACAAATTCCTGCCTTCAGCCCTTCCAAAGGAGTTTGGCGCATTGAAGAAGCTGACGTATCTGTGGATGACGGATGCAAATTTGGTCGGCGAAATACCTGAGAGCTTCAACAATTTGTCGAGTCTGGAACTCTTGGATCTCGCAAACAACAAATTGAACGGTACGATCCCGGGAGGCATGCTTATGTTGAAGAATTTGACCTATTTGTATTTATTCAATAATAGATTGTCCGGCCACATTCCTTCATTGATAGAAGCTCTCAGCTTGAAAGAAATTGATCTTTCCGACAACTATATGACGGGGCCGATTCCAGCGGGTTTCGGGAAGCTACAAAATTTGACGGGTTTGAATCTTTTCTGGAATCAGTTGTCAGGAGAGATACCAGCAAATGCAAGCCTCATTCCTACACTGGAAACCTTCAAAATTTTTAGCAATCAATTGAGTGGAGTTTTGCCTCCAGCATTTGGCCTTCATTCGGAGCTTCGACTCTTTGAGGTTTCCGAGAATAAACTAAGTGGAGAATTACCTCAACATTTATGCGCTAGGGGGGCTTTGCTTGGAGTGATTCCTTCCGGCATCTGGACATCCTCGGACATGGTATCGGTGATGTTAGACGGAAATTCATTCTCGGGGACACTTCCAAGCAAATTGGCAAGGAATTTGTCCAGAGTGGACATCAGTAACAACAAGTTTTCTGGTCCAATTCCTGCTGGAATATCATCTTTGTTGAATCTATTGTTGTTCAAGGCAAGCAATAATCTATTTTCAGGAGAAATTCCAGTGGAATTGACGAGTCTTCCATCCATATCTACTCTGTCGCTTGATGGGAATCAATTGTCAGGCCAACTTCCTCTTGATATTATCTCCTGGAAGTCACTATTTGCTTTGAATTTGTCAACAAATTATCTCTCTGGCCCAATTCCAAAGGCCATTGGATCTTTGCCTAGCCTCGTGTTTCTTGACTTATCTGAAAACCAATTCTCAGGCGAAATCCCCCATGAATTCAGTCATTTCGTGCCTAATACCTTTAACCTTTCATCCAACAATCTATCTGGGGAAATCCCACCCGCCTTTGAAAAGTGGGAATACGAAAACAATTTCTTGAATAATCCCAATCTGTGTGCCAATATTCAAATTCTGAAGAGTTGCTACTCTAAAGCCAGTAACTCCTCTAAATTGTCAACCAATTACCTAGTCATGATTATATCTTTCACCCTAACTGCTTCCCTGGTTATCGTACTTCTTATCTTTTCCATGGTTCAAAAGTATCGAAGGAGGGACCAAAGGAACAATGTTGAAACATGGAAGATGACATCCTTCCATAAGTTAAATTTCACTGAATCCAACATATTGTCGCGTTTGGCACAAAATAGTTTAATTGGAAGTGGGGGGTCAGGGAAGGTATATCGTACCGCCATTAACCATTCTGGTGAAGTGGTCGCTGTTAAATGGATTTTGACTAATAGGAAACTAGGCCAGAACCTCGAGAAGCAATTCGTAGCAGAAGTCCAAATATTAGGAAGTGATGTTGTCTTGGACTGGCCGATGAGGCTGCAAATTGCCATTGGAGCTGCTCGAGGCCTATGCTATATGCACCATGATTGCTCTCCCCCAATCATTCATCGAGATGTGAAGTCCAGCAACATCTTATTGGACTCTGAATTTAATGCAAAAATTGCAGATTTTGGATTGGCCAAAATGTTAGCCAAGCAAGTAGAAGACCCTGAAACAATGTCTGTGGTTGCAGGCACTTTCGGATATATTGCTCCAGAGTATGCTTATACAAGAAAGGCGAATAAGAAGATCGACGTCTACAGTTTTGGAGTTGTGCTTCTAGAGTTGGCCACTGGAAGAGAAGCCAATAGGGGGAACGAGCATATGAACCTTGCTCAATGGGCCTGGCAGCACTTTGGAGAGGGAAAATTCATTGTGGAAGCCTTGGATGAGGAGATCATGGAAGAATGCTATATGGAAGAAATGAGCAATGTGTTCAAACTAGGCCTCATGTGTACTAGCAAAGTACCTTCTGACAGGCCTTCCATGAGGGAGGTATTGCTAATTCTTGATCGATGTGGTCCTCAGCAAGGGCGTGCTCTACCACTGAGCTAA 2739 43.26 MYPQKGNRTKDQFTFSCRVKHAGMESLLLITLPLLVISQNLDAELSILLQVKQQLGNPPSIQSWNSSSSPCDWPEITCTDNTITEISLYGKSITHKIPARICDLKNLMVLDVSNNYIPGEFPDILNCSKLEYLLLLQNNFVGPIPANIDRLSRLRYLDLTANNFSGDIPAVIGQLRELFYLSLVQNEFNGTWPKEIGNLANLQHLAMAYNDKFLPSALPKEFGALKKLTYLWMTDANLVGEIPESFNNLSSLELLDLANNKLNGTIPGGMLMLKNLTYLYLFNNRLSGHIPSLIEALSLKEIDLSDNYMTGPIPAGFGKLQNLTGLNLFWNQLSGEIPANASLIPTLETFKIFSNQLSGVLPPAFGLHSELRLFEVSENKLSGELPQHLCARGALLGVIPSGIWTSSDMVSVMLDGNSFSGTLPSKLARNLSRVDISNNKFSGPIPAGISSLLNLLLFKASNNLFSGEIPVELTSLPSISTLSLDGNQLSGQLPLDIISWKSLFALNLSTNYLSGPIPKAIGSLPSLVFLDLSENQFSGEIPHEFSHFVPNTFNLSSNNLSGEIPPAFEKWEYENNFLNNPNLCANIQILKSCYSKASNSSKLSTNYLVMIISFTLTASLVIVLLIFSMVQKYRRRDQRNNVETWKMTSFHKLNFTESNILSRLAQNSLIGSGGSGKVYRTAINHSGEVVAVKWILTNRKLGQNLEKQFVAEVQILGSDVVLDWPMRLQIAIGAARGLCYMHHDCSPPIIHRDVKSSNILLDSEFNAKIADFGLAKMLAKQVEDPETMSVVAGTFGYIAPEYAYTRKANKKIDVYSFGVVLLELATGREANRGNEHMNLAQWAWQHFGEGKFIVEALDEEIMEECYMEEMSNVFKLGLMCTSKVPSDRPSMREVLLILDRCGPQQGRALPLS* 913
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 2430407 2436655 + Vvi15g67 Vvi15g67 776759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g67 912 Pfam Leucine rich repeat N-terminal domain 42 78 IPR013210 -
Vvi15g67 912 SMART LRR_typ_2 273 297 IPR003591 -
Vvi15g67 912 SMART LRR_typ_2 151 175 IPR003591 -
Vvi15g67 912 SMART LRR_typ_2 476 500 IPR003591 -
Vvi15g67 912 SMART LRR_typ_2 249 272 IPR003591 -
Vvi15g67 912 SMART LRR_typ_2 104 127 IPR003591 -
Vvi15g67 912 SMART LRR_typ_2 524 547 IPR003591 -
Vvi15g67 912 SMART LRR_typ_2 320 344 IPR003591 -
Vvi15g67 912 Gene3D Transferase(Phosphotransferase) domain 1 716 901 - -
Vvi15g67 912 ProSitePatterns Serine/Threonine protein kinases active-site signature. 749 761 IPR008271 GO:0004672|GO:0006468
Vvi15g67 912 ProSiteProfiles Protein kinase domain profile. 616 912 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi15g67 912 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 719 907 - -
Vvi15g67 912 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 397 718 - -
Vvi15g67 912 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 26 399 - -
Vvi15g67 912 Pfam Protein kinase domain 732 895 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi15g67 912 Pfam Leucine rich repeat 228 286 IPR001611 GO:0005515
Vvi15g67 912 Gene3D Phosphorylase Kinase; domain 1 630 715 - -
Vvi15g67 912 PANTHER KINASE FAMILY WITH LEUCINE-RICH REPEAT DOMAIN-CONTAINING PROTEIN 719 907 - -
Vvi15g67 912 PANTHER KINASE FAMILY WITH LEUCINE-RICH REPEAT DOMAIN-CONTAINING PROTEIN 397 718 - -
Vvi15g67 912 PANTHER KINASE FAMILY WITH LEUCINE-RICH REPEAT DOMAIN-CONTAINING PROTEIN 26 399 - -
Vvi15g67 912 Gene3D Ribonuclease Inhibitor 41 213 IPR032675 -
Vvi15g67 912 SUPERFAMILY Protein kinase-like (PK-like) 655 898 IPR011009 -
Vvi15g67 912 ProSiteProfiles Leucine-rich repeat profile. 275 297 IPR001611 GO:0005515
Vvi15g67 912 Gene3D Ribonuclease Inhibitor 392 602 IPR032675 -
Vvi15g67 912 Gene3D Ribonuclease Inhibitor 273 391 IPR032675 -
Vvi15g67 912 Gene3D Ribonuclease Inhibitor 214 272 IPR032675 -
Vvi15g67 912 SMART serkin_6 664 897 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi15g67 912 ProSitePatterns Protein kinases ATP-binding region signature. 670 693 IPR017441 GO:0005524
Vvi15g67 912 SUPERFAMILY L domain-like 52 386 - -
Vvi15g67 912 SUPERFAMILY L domain-like 298 595 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76248 PF00069 Pkinase 5.40E-27 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g67 - K00924 vvi:100252254 1433.31