Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g675 ATGGCGCATGGGAATAATATCAGAGGCGGTCTCGAGCCAGGTTTGGAAAGCGATCATCTGTTTACGGAGCTATGGAGGGCATGTGCTGGTCCTTTGGTTGATGTTCCTAAGCCTCATGAGAGAGTTTTCTACTTCCCCCAAGGTCACATGGAACAATTACAAGCCTCTACGAATCAGGGGGTGGATCAGAGGATTCCATTGTTCAATCTTCCTTCAAAGATCCTTTGTCGTGTTGTTCACACCCGGTTACTGGCAGAACAAGAAACAGACGAAGTTTATGCACAGATCACTTTACAGCCAGAAGCAGATCAAACAGAGCCTAAGAGTCCTGATTCATGCCCTGATGAGGCTCCAAAACAAACCGTTCATTCATTTTGCAAGATTTTAACGGCCTCTGATACAAGCACACATGGGGGGTTTTCTGTTCTCCGTAAGCATGCCAATGAATGCTTGCCTCCATTGGATATGAGCCAAGCAACCCCAACTCAGGAATTAGTTGCTAGAGATCTACATGGATATGAGTGGCGATTTAAGCATATATTTAGAGGTCAACCCCGGAGACATTTGCTTACAACAGGATGGAGTACTTTTGTCACTTCAAAGAGGCTAGTTGCTGGGGATGCCTTTGTGTTTCTGAGAGGTGATAATGGAGAGTTGCGAGTTGGGGTTCGCCGTCTTGCTCGTCAACAGAGCCCCATGCCCTCATCTGTCATATCAAGCCAGAGCATGCATCTAGGAGTGCTTGCTACTGCATCTCATGCTGTTACCACCCAGACCCTCTTTGTTGTTTACTACAAGCCAAGGACAAGCCAATTCATTATTAGCTTAAACAAATACTTGGAAGCAGTTAACTATGGCTTTGCAGTTGGCATGCGCTTCAAAATGAGATTTGAGGGAGAAGATTCTCCTGAAAGAAGGTTCACAGGCACCATAGTTGGAATTGGAGATATTTCTCCACAGTGGTCAAATTCTAAATGGCGTTCATTGAAGATTCAATGGGATGAACCTGCAACAATTCAAAGACCTGAGAGGGTTTCTTCATGGGATATAGAGCCTTTTGTAGCTTCTGCTTCATTAAACCTTACTCAACCACCAGTAAAGATCAAGAGGCCCAGACCTCTTGATCTTCCAGTTGCTGAAAATACTTCCAGTTCAGTTCCTTCCCCTTTCTGGTATGCTGGATCATCCCCATCTCATGAATTAACCCAGTTAGGTGGTGTGACTGAAGTCCAAAGCAGTGAAAGCCAGGTACACTGGCCTCCGAAGCCAAAAGAAATTAATGGCAATCAAAACTCTTCTATTGGCTGCCGGTTGTTTGGGATTGATCTGACAAACAACTCTAAGGCCACTGCTCTTCTGGAGATGATCCAGAATTTGGATGTGTCGAAATCCTCGAATGAGCAAAAACAAGTTGTACCAGAGGCATCTCAAAAGGAGACACAGGGCAGGCAGAGTTGCACTCCTTCCTCAAGGACACGTACTAAGAAGGTGCAAATGCAAGGAGTAGCAGTTGGTCGTGCTGTTGACTTGACTGCATTGGAAGGATATGATGAGCTTATAAGTGAGCTGGAGAAAATGTTCGAGATCAAAGGAGAGCTTTGCCCTCGGAATAAATGGGAAGTGGTTTTCACTGATGATGAAGGAGATATGATGCTTGTGGGTGATGATCCATGGCAGGAATTCTGTAAGATGGTGAGAAAGATCTTCATATATTCTAGCGAGGAAGTAAAAAAGATGAGTCCAAGATGCAAGCTTTCTACGTCATCTTTAGATGGTGAAGGAACAGTTATAAGCTTGGATTCAGAGTTAAGAACTGAACCATAG 1824 44.57 MAHGNNIRGGLEPGLESDHLFTELWRACAGPLVDVPKPHERVFYFPQGHMEQLQASTNQGVDQRIPLFNLPSKILCRVVHTRLLAEQETDEVYAQITLQPEADQTEPKSPDSCPDEAPKQTVHSFCKILTASDTSTHGGFSVLRKHANECLPPLDMSQATPTQELVARDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDAFVFLRGDNGELRVGVRRLARQQSPMPSSVISSQSMHLGVLATASHAVTTQTLFVVYYKPRTSQFIISLNKYLEAVNYGFAVGMRFKMRFEGEDSPERRFTGTIVGIGDISPQWSNSKWRSLKIQWDEPATIQRPERVSSWDIEPFVASASLNLTQPPVKIKRPRPLDLPVAENTSSSVPSPFWYAGSSPSHELTQLGGVTEVQSSESQVHWPPKPKEINGNQNSSIGCRLFGIDLTNNSKATALLEMIQNLDVSKSSNEQKQVVPEASQKETQGRQSCTPSSRTRTKKVQMQGVAVGRAVDLTALEGYDELISELEKMFEIKGELCPRNKWEVVFTDDEGDMMLVGDDPWQEFCKMVRKIFIYSSEEVKKMSPRCKLSTSSLDGEGTVISLDSELRTEP* 608
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 17300321 17304725 - Vvi15g675 Vvi15g675 777367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g675 607 ProSiteProfiles PB1 domain profile. 492 584 IPR000270 GO:0005515
Vvi15g675 607 CDD B3_DNA 123 225 IPR003340 GO:0003677
Vvi15g675 607 PANTHER AUXIN RESPONSE FACTOR 11 12 434 - -
Vvi15g675 607 PANTHER AUXIN RESPONSE FACTOR 11 448 591 - -
Vvi15g675 607 Pfam AUX/IAA family 467 528 IPR033389 -
Vvi15g675 607 Pfam AUX/IAA family 538 582 IPR033389 -
Vvi15g675 607 SUPERFAMILY DNA-binding pseudobarrel domain 116 254 IPR015300 -
Vvi15g675 607 MobiDBLite consensus disorder prediction 99 118 - -
Vvi15g675 607 ProSiteProfiles B3 DNA-binding domain profile. 125 227 IPR003340 GO:0003677
Vvi15g675 607 Pfam B3 DNA binding domain 125 225 IPR003340 GO:0003677
Vvi15g675 607 Pfam Auxin response factor 251 330 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vvi15g675 607 Gene3D - 489 580 - -
Vvi15g675 607 SMART B3_2 125 227 IPR003340 GO:0003677
Vvi15g675 607 Gene3D - 287 359 - -
Vvi15g675 607 SUPERFAMILY CAD & PB1 domains 490 568 - -
Vvi15g675 607 MobiDBLite consensus disorder prediction 463 494 - -
Vvi15g675 607 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 448 591 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vvi15g675 607 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 12 434 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vvi15g675 607 Gene3D - 122 226 IPR015300 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi2g162 Vvi15g675 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14089 PF02362 B3 3.20E-21 CL0405 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g675 K14486 - vvi:100265555 874.774