Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g683 ATGGAATCGGGAGAAAGCAGTGAATGTGTTGCAAGTTCTGGTTGTCATCATCACCACAGGTCCTCCTTGAGGCATCATCAAAACGGCGTCGTTTCCGGGGTTCTTCGTCGCTCCCTCACCATGGTCCTGGAGCTGCTTAAGTGCTCTGTTTGCTTCGATTTTATGTACTCACCTATTTATCATTGCCACAATGGACACACACTCTGTTCAAGCTGTAAAGCAAGGGTACTCAACAAATGTCCCAGTTGTAGGCAGCAGCTCGGTAATATAAGGTGTCTAGCTCTGGAGAAGATGGCCAAATCACTTGAACTGCATTGCTATCATGCTCTATGGCTGCAATTCAAATGTCGATTTTTAATTGCTGATGTCAATGAAGAAGAAACCTGCACATGGATGGTAAAAATCATCAATTGTTATGGCAAATACTTTTGTGTTCATGCTGAAGCCTTCTTTCAAGCGTCGACTCCCATTTGCGTGGTATTCCTCAGCCTGACAGGCAACCATGCAGAGGCCTGCAACTACAGCTGCAGCCTGGAGATAGGGGGAAATGGGCGGAAGCTTACTTTTGAGGGCATCCCACGAAGCATTAGAGAGAGTGAGAGGAGTTTGGAGAGTGCGGACAGTCTCATTGTGCTGGGAAGCATGGTGCATTCCTTAGGAGGGGAGACGAGAGAGCCAAAACTTGAAATTACATGTCGGATACGGAAATCCCAGATTCCAATGTGTGCATGTGTGGATAAAACCGGTTGA 750 46.8 MESGESSECVASSGCHHHHRSSLRHHQNGVVSGVLRRSLTMVLELLKCSVCFDFMYSPIYHCHNGHTLCSSCKARVLNKCPSCRQQLGNIRCLALEKMAKSLELHCYHALWLQFKCRFLIADVNEEETCTWMVKIINCYGKYFCVHAEAFFQASTPICVVFLSLTGNHAEACNYSCSLEIGGNGRKLTFEGIPRSIRESERSLESADSLIVLGSMVHSLGGETREPKLEITCRIRKSQIPMCACVDKTG* 250
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 17375821 17379543 + Vvi15g683 Vvi15g683 777375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g683 249 CDD RING-HC_SIAHs 46 84 - -
Vvi15g683 249 SUPERFAMILY RING/U-box 42 88 - -
Vvi15g683 249 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 107 234 IPR008974 GO:0005515
Vvi15g683 249 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINAT3-RELATED 113 240 - -
Vvi15g683 249 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINAT3-RELATED 5 109 - -
Vvi15g683 249 Pfam Seven in absentia protein family 116 225 IPR018121 GO:0005737|GO:0006511|GO:0007275
Vvi15g683 249 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 32 106 IPR013083 -
Vvi15g683 249 ProSiteProfiles Zinc finger RING-type profile. 48 84 IPR001841 -
Vvi15g683 249 SUPERFAMILY TRAF domain-like 98 233 - -
Vvi15g683 249 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 5 109 - -
Vvi15g683 249 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 113 240 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi2g154 Vvi15g683 ECH
Vvi15g683 Vvi16g1041 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g683 K04506 - vvi:100250196 268.855