Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g732 ATGAATTTCAAGCAGAAATTTGTAAGGTTTCAGGAATGGAGTCCAGCAAGATCCGTGAGTTCTGAGGGGCAATTCCCCCCATACCGGAGAGGAACTAGAGCAACTATAAGTGGAATTCTTGAGAGGATTCAGGAAGGATTTGCAACAGTTTCGGAAAGGATTCAGAGCTGGAGAAAATCACTAAGCCTCCCTTCAAGAACCAGAAAGCCATCAAAAGAATTGAAGAGTCCCAGGAAGAAAATTCTTGACCCCCAGGGTTCGTTTCTTCAGGAGTGGAATAAAGTATTCCTCATCTCTACTGTACTTGCAGTTGCCTTGGATCCATTTTTCTTTTACATCCCAATTCTTCATCGCGAGGAGACCTGCCTTGATTTGGACACGAAACTGGGGGTCATTGCTTGTGTTCTTCGTTCAATTGTGGACATCTTTTACATTCTTCATATTATCTTTCAGTTCCATACTGGGTTTATCGCCCCTTCTTCTAGAGTGTTTGGGAGGGGTGAATTAGTTGAAGCCCCTTCAGCTATAGCGAAAAGATACTTGTCCACCTACTTCATTATCGATATTCTCTCAATCCTTCCCCTCCCACAGTTGGTTATTCTGATCGTCAAAGCTGAAGTGAAAGGACCGGTTTCATTGAATACAAAGGACTTGTTGAAGTCTGTCATTTTCTCCCAGTATGTGCCGAGACTACTCCGGATTTATCCACTATATAAAGAAGTGACGACAACTTCTGGCATTATTACTCAAACCGCATGGGCTGGGGCTGTTTTCAATCTCTGCCTCTATATGCTGGCCAGTCATGTAGTTGGAGCTTTTTGGTACTTGTTTGCAATAGAACGACAAAATACCTGCTGGGTAAAGGGAAGTCGGTCATGTGGTTTCAATCCTGTAGGTTTGTACTGTGGAGCAGAAAGTAGACGAAATAATATTACTCCACAGGTTCATGATTGTCTAAATGCAGCTTGTCCTCTTATCGACCCTGATGATATTGTGAATACAACAACGTTTAACTTTGGAATATTCTTTGATGCTCTTCAATCTCATGTGGTGGAAAGAAAAGATTTCCAAAATAAATTCTTTTACTGCTTTTGGTGGGGTCTGAGAAATCTTAGTTCTCTGGGACAGAACCTCAAAACAAGCACTTTCATCGAGGAGATCTTCTTTGCTGTGTTTATCTCCATCTTTGGATTGGTTTTATTTTCACTACTCATTGGAAATATGCAGAAATATCTGCAATCCACAACTGTTAGAATCGAAGAGATGAGAGTAAAAAGGCAGGATGCAGAGCAGTGGATGGCTCATCGATTGCTCCCTGACCCCCTGAGGGTGCGGATTAGGCGGTATGAACAATACAAATGGCAAGAAACCAGAGGTGTCCAGGAGCATAAACTTATTTCAGATCTTCCCAAGGACCTCAGGAGAGACGTAAGGCGCCATCTCTGCTGGAATCTGCTAATGAGAGTGCCAATGTTCGAAAAAATGGACAGCCAACTGTTGGATGCACTGTGTGATCACCTAAAGCCAGTTCTTTATACAGAAAACAGCACCATTCTCCGTGAGGGGGATCCTGTTGATGAGATCTTCTTCATCATGCGAGGCAAGCTGTCGACTATAACCACCAATGGTGGAAGAACTGGCTTCTTCAATGAAACTTATCTCAAGGCTGGTGACTTCTGTGGAGATGAGCTTCTCACATGGGCCTTGGAGTCCAAATCCTCTTCCAATCTCCCCATCTCAACCAGAACTGTAAAGGCCATAACTGAGGTTGAAGCCTTTGGTCTAATGTCCAATGACCTGATAACCGTTGCCTCCCAGTTCTTCTACCGTCTCCACAGCAAGCAGCTCCAGTATACTTTCAGGTTCTACTCCCAGCAGTGGAGGACATGGGGAGCCTGCTTTATACAAGCTGCTTGGCAGCGTTACAGGAGGAGGAAGCAGGACAAGGCTTTACAGGAGGCGGAAGAGAGGCTGCAAGATGCTTTATCAAGAGAGGTAGGTGCCTCTCCAAGCCTCGGTGCCACTGTCTTTGCATCAAGGTTTGCTGCCAAACTTCTACGAGCCCTGCGGCGTAACGGTGGACGCAGAACCCGATTGCCACAGAGACTACCACCTTTGATGCCTCAGAAGCCCACTGATCCTGATTTTACTTCGGCAGAGATGAATTTCAAGCTGGTTAATCCATGGTCCAGGAAGACAATTCTTGATCCAGAGGGATCATTTCTTCAGACATGGAATAAAATATTTCTAGTCTCTTGTGTGCTTGCAATTTCCCTCGATGCATTTTTCTTTTATGCCCCTGTTATTAATCGTCATAGTACATGCCTAGATTTGGATGACCGATTGCAGATTGTTGCTTGTGTTCTTCGTACACTCATCGATGTCTTCTACATCCTTCATATTATCTTTCAGTTCCGCACTGGTTTTGTTGCCCCTTCTTCTCGAGTATTTGGAGATGGTGTATTAATTGATGATTCTTCAGTTATAGCGAAAAGATACTTGCCCTACTTCGTCATCGACATTCTATCAATTTTACCCCTCCCACAGGTAGCAGTTTTTATTGTCAACCCACAATTGAAAAGTCCAGTTTCATTCATTAGGAAGGACTTCTTGAAGTTTGTTATTCTCTCCCAATTAGTGCCAAGACTTGTGCGGATCTACCCACTATATAAAGAAGTAACTACAACTTCTGGCATACTTATTGAAACGGCATGGGCTGGTGCTGCTATCAATCTCTTCTTCTATATGCTAGCCAGTCATGTGGTTGGAGCCTTTTGGTACTTGCTGTCTATAGAGAGGCAAGATCAGTGTTGGCGTAATTGGTGTGGGGCACATAATGTGAGTTGTTCATATTTATATTGTGGAGGAGACCGAATACACAATGACCTTGCTGAGCGATATGCATTACTAAATGCTTCTTGCCCTCTTAGTGAACCAGATGGAATTGAAAATTCCACAGTTTTTAACTTTGGAATATTCATTAAGGCTCTTCAGTCTCGGGTTGTGGAAACAAGAGATTTTCCATATAAGTTTTCTTATTGCTTTTGGTGGGGTCTGCGAAATATTAGTTCTCTGGGTTCAAACCTTGATACAAGCCCTTTCATTGGAGAGGTTCTGTTTGCTGTCTTTATTTCCATATTTGGATTGATATTATTTTCATTACTTGTTGGCAATATGCAGAAATATCTGCAAAATCTGCAATCCATAGCTGCTAGAATTGAAGAGGAAAGAGAGAAAAGGAAAAACACTGAGCTGTGGATGTCCCACCGCATCCTTCCTGAGCACCTGAGGATTCGGATTAGGCAGTATAGACAGTACAAATGGAAAAAAACCAAGGGTGTTGACGAAAATGGGCTTATCAATGACCTTCCGAAGGACCTCCGAAGAGACATAAAGCGGCATCTCCGTTTGGCTCTACTTATGAGAATGCCAGTGTTTGAAAGATTTGATGAGCTACTGTTGGATGCAATTTGTGATCGCCTCAAGCCAGTTCTTTATACAGAAGGTAGCTACATTGTCCGTGAGGGGGATCCAATTGATGAAATGCTCTTTATCGTGCGAGGCAAACTAAGAAGCATAAGCACAGATGGTGGAAGAACTGGCTTCCTCAACTTAATTTATCTTGAGGCTGGTGATTTCTATGGAGAAGAGCTTCTTCCATGGGCCTTGGAGTCCCAGTCCTCTCCATTTCACCCCATCTCAACCAGAACCATAAGTGCCGTAACAGAGGTTGAAGCCTCTGCTCTAACGGCTCATGACTTGAAGTCTCTGATCTCCTATCACTTCTCGCATCCTCTTCCCAGAAAGCAGCTTGTGCAGAGTCTCAGGTTGTGGTCACAGAAGTGGAGGACATGGGCTGCCTGTTTTATACAAGTAGCTTGGTGGCGTTACCAGAAGAGGAAGCAAAATAAGGCCTTACAGGAGGCAGAAGACAGGTTGCGAGATGCTTTGTCGAAAGCAGTAGGCACCTCTACAACCTTGGGCGCCACTAATTATGCATCGAGGTTTGCTGCCAATATGTTACGAATCTTGAGGCGCAATGGTGGTAGCAGAGCCAGATTGCCACAAAGATCATGGTTCGCGCTGCCTCCTAAGCCACGTGATCCCCAGCTTACCATCTGA 4122 44.03 MNFKQKFVRFQEWSPARSVSSEGQFPPYRRGTRATISGILERIQEGFATVSERIQSWRKSLSLPSRTRKPSKELKSPRKKILDPQGSFLQEWNKVFLISTVLAVALDPFFFYIPILHREETCLDLDTKLGVIACVLRSIVDIFYILHIIFQFHTGFIAPSSRVFGRGELVEAPSAIAKRYLSTYFIIDILSILPLPQLVILIVKAEVKGPVSLNTKDLLKSVIFSQYVPRLLRIYPLYKEVTTTSGIITQTAWAGAVFNLCLYMLASHVVGAFWYLFAIERQNTCWVKGSRSCGFNPVGLYCGAESRRNNITPQVHDCLNAACPLIDPDDIVNTTTFNFGIFFDALQSHVVERKDFQNKFFYCFWWGLRNLSSLGQNLKTSTFIEEIFFAVFISIFGLVLFSLLIGNMQKYLQSTTVRIEEMRVKRQDAEQWMAHRLLPDPLRVRIRRYEQYKWQETRGVQEHKLISDLPKDLRRDVRRHLCWNLLMRVPMFEKMDSQLLDALCDHLKPVLYTENSTILREGDPVDEIFFIMRGKLSTITTNGGRTGFFNETYLKAGDFCGDELLTWALESKSSSNLPISTRTVKAITEVEAFGLMSNDLITVASQFFYRLHSKQLQYTFRFYSQQWRTWGACFIQAAWQRYRRRKQDKALQEAEERLQDALSREVGASPSLGATVFASRFAAKLLRALRRNGGRRTRLPQRLPPLMPQKPTDPDFTSAEMNFKLVNPWSRKTILDPEGSFLQTWNKIFLVSCVLAISLDAFFFYAPVINRHSTCLDLDDRLQIVACVLRTLIDVFYILHIIFQFRTGFVAPSSRVFGDGVLIDDSSVIAKRYLPYFVIDILSILPLPQVAVFIVNPQLKSPVSFIRKDFLKFVILSQLVPRLVRIYPLYKEVTTTSGILIETAWAGAAINLFFYMLASHVVGAFWYLLSIERQDQCWRNWCGAHNVSCSYLYCGGDRIHNDLAERYALLNASCPLSEPDGIENSTVFNFGIFIKALQSRVVETRDFPYKFSYCFWWGLRNISSLGSNLDTSPFIGEVLFAVFISIFGLILFSLLVGNMQKYLQNLQSIAARIEEEREKRKNTELWMSHRILPEHLRIRIRQYRQYKWKKTKGVDENGLINDLPKDLRRDIKRHLRLALLMRMPVFERFDELLLDAICDRLKPVLYTEGSYIVREGDPIDEMLFIVRGKLRSISTDGGRTGFLNLIYLEAGDFYGEELLPWALESQSSPFHPISTRTISAVTEVEASALTAHDLKSLISYHFSHPLPRKQLVQSLRLWSQKWRTWAACFIQVAWWRYQKRKQNKALQEAEDRLRDALSKAVGTSTTLGATNYASRFAANMLRILRRNGGSRARLPQRSWFALPPKPRDPQLTI* 1374
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 18026056 18036291 - Vvi15g732 Vvi15g732 777424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g732 1373 Coils Coil 644 664 - -
Vvi15g732 1373 Pfam Ion transport protein 743 1068 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vvi15g732 1373 Pfam Ion transport protein 92 418 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vvi15g732 1373 ProSiteProfiles cAMP/cGMP binding motif profile. 491 575 IPR000595 -
Vvi15g732 1373 SUPERFAMILY Voltage-gated potassium channels 737 1067 - -
Vvi15g732 1373 Pfam Cyclic nucleotide-binding domain 1165 1259 IPR000595 -
Vvi15g732 1373 Pfam Cyclic nucleotide-binding domain 511 602 IPR000595 -
Vvi15g732 1373 ProSiteProfiles cAMP/cGMP binding motif profile. 1145 1258 IPR000595 -
Vvi15g732 1373 CDD CAP_ED 1145 1258 IPR000595 -
Vvi15g732 1373 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 729 1372 - -
Vvi15g732 1373 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 5 719 - -
Vvi15g732 1373 Gene3D Helix hairpin bin 418 482 - -
Vvi15g732 1373 Gene3D Helix hairpin bin 1073 1135 - -
Vvi15g732 1373 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 10-RELATED 729 1372 - -
Vvi15g732 1373 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 10-RELATED 5 719 - -
Vvi15g732 1373 SUPERFAMILY cAMP-binding domain-like 1075 1261 IPR018490 -
Vvi15g732 1373 CDD CAP_ED 491 623 IPR000595 -
Vvi15g732 1373 SUPERFAMILY Voltage-gated potassium channels 83 413 - -
Vvi15g732 1373 SMART cnmp_10 491 622 IPR000595 -
Vvi15g732 1373 SMART cnmp_10 1145 1276 IPR000595 -
Vvi15g732 1373 Coils Coil 1059 1083 - -
Vvi15g732 1373 Gene3D - 109 415 - -
Vvi15g732 1373 Gene3D - 749 1067 - -
Vvi15g732 1373 Gene3D Jelly Rolls 489 608 IPR014710 -
Vvi15g732 1373 Gene3D Jelly Rolls 1143 1261 IPR014710 -
Vvi15g732 1373 Coils Coil 1299 1319 - -
Vvi15g732 1373 SUPERFAMILY cAMP-binding domain-like 421 607 IPR018490 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g732 K05391 - vvi:100260148 1407.12