Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g737 ATGGCAGATTCGGGTGAAATTCAGCCTACTGAACCAGTGGACACAGGAGAAAAGCAGCAGTCCGAGCCAGTATGCAATTTCTTTAGAAAGCCAACAAAAAACAAGAACATTAGGAAAAGGACGCACGACGAAGATGAAAATGAAGACTCAAAAACTGGGACTTCAGTGCTGCATCAGCAGAAGAAGCCTCCCAAACCTGATAATAAGCTGTATTTTTCAACTGGGTCATCTAGAAAATCGACAATGGATGAACCCAACAAAGAATCTGAGCCAATTTTTCAATTTGAGTCTTCAAAGGAGATTCAAGTCCAACATGATAGTAGGGCAACGGCAACTCTTGAGACTGAGACTGATTTTTCAAGAGATGCTCGAGCAATTCGAGAGAGAGTTCTTAAGCAATCACAAGACGCATTAAAGGGGAAAAACAAGAGTGATGAAAAGTTGTATAAAGGGATTCATGGATATACCGATTACAAGGCGGGATTCCGAAGAGAGCAAACAGTTGCCAGTGAGAAAGCTGGTGGGGCACATGGTCCTCTAAGGGCTTCTGCTCACATTAGGGCATCTGCAAGGTTTGATTATCAGCCCGACATTTGTAAGGATTATAAAGAAACGGGGTACTGTGGGTTTGGAGATGCTTGTAAATTTATGCATGACCGGGGGGATTACAAGTCAGGGTGGCAGATGGAGAAAGAGTGGGAAGAAGCAGAGAAAGCAAGGAAGAGAAATTTGGCTATGGGAGGAGATGATGCAGATGAGGGAGGTGGAGGACAGAGCGATGAAGATGACGATGATGCATTGCCATTTGCCTGTTTCATTTGCAGGCAGCCTTTCGTAGATCCTGTTGTAACCAAGTGCAAGCACTTTTTCTGCGAGCATTGTGCTTTAAGGCACCATTCTAAGAACAAGAAGTGCTTTGTCTGCAACCAGCCCACCCTTGGCATGTTCAACACGGCGCATGAGATACGGAAGAAGATGGCTGCAGAGAGAAAATGA 996 44.68 MADSGEIQPTEPVDTGEKQQSEPVCNFFRKPTKNKNIRKRTHDEDENEDSKTGTSVLHQQKKPPKPDNKLYFSTGSSRKSTMDEPNKESEPIFQFESSKEIQVQHDSRATATLETETDFSRDARAIRERVLKQSQDALKGKNKSDEKLYKGIHGYTDYKAGFRREQTVASEKAGGAHGPLRASAHIRASARFDYQPDICKDYKETGYCGFGDACKFMHDRGDYKSGWQMEKEWEEAEKARKRNLAMGGDDADEGGGGQSDEDDDDALPFACFICRQPFVDPVVTKCKHFFCEHCALRHHSKNKKCFVCNQPTLGMFNTAHEIRKKMAAERK* 332
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 18108275 18114975 + Vvi15g737 Vvi15g737 777429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g737 331 ProSiteProfiles Zinc finger C3H1-type profile. 193 221 IPR000571 GO:0046872
Vvi15g737 331 MobiDBLite consensus disorder prediction 13 27 - -
Vvi15g737 331 MobiDBLite consensus disorder prediction 1 111 - -
Vvi15g737 331 SUPERFAMILY RING/U-box 270 313 - -
Vvi15g737 331 PANTHER ZINC FINGER PROTEIN 183 14 330 IPR039971 -
Vvi15g737 331 MobiDBLite consensus disorder prediction 37 52 - -
Vvi15g737 331 SMART ring_2 271 308 IPR001841 -
Vvi15g737 331 SUPERFAMILY CCCH zinc finger 192 224 IPR036855 GO:0046872
Vvi15g737 331 Gene3D - 191 225 - -
Vvi15g737 331 SMART c3hfinal6 193 220 IPR000571 GO:0046872
Vvi15g737 331 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 269 328 IPR013083 -
Vvi15g737 331 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 1-LIKE 14 330 - -
Vvi15g737 331 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 194 219 IPR000571 GO:0046872
Vvi15g737 331 Pfam Zinc finger, C3HC4 type (RING finger) 270 312 - -
Vvi15g737 331 ProSiteProfiles Zinc finger RING-type profile. 271 309 IPR001841 -
Vvi15g737 331 ProSitePatterns Zinc finger RING-type signature. 286 295 IPR017907 -
Vvi15g737 331 CDD RING-HC_RNF113A_B 269 309 - -
Vvi15g737 331 MobiDBLite consensus disorder prediction 95 110 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14092 PF13920 zf-C3HC4_3 4.80E-09 CL0229 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g737 K13127 - vvi:100251778 663.685