Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g772 ATGGGGAATGAAGAAGAGGGGAAGTCCCCTAAGCCTGAAAAACCAACTTCACCTCCACCACCGGATCAAGCCAATATTCATGTGTATCCTGATTGGGCAGCCATGCAGGCATATTATGGCCCCAGGGTCACTCTACCTCCATATTACAATTCAGCTATGGCATCTGGTCATGCTCCTCATCCTTACATTTGGGGCCCTCCACAGCCAATGATGCCGCCTTATGGGCCACCATATGCGGCAATCTACTCGCCTGGAGGTGTTTATCCACATCCTGCAGTTCCTCTTGGGTCACATTCACATGGGCATGGGGTTCAATCATCACCTGTTGTAAGCGAAGCATTGGCTGCACCTCCTTTGAGCATAGAAACACCTGCAAAGTCATCAGGAAATACAGACCGTGGTTTAATGAAGAAGTTGAAAGGGTTTGATGGGCTTGCAATGTCCATAGGGAATGGCAATGGTGAGAGCACCGAGGGTGGGTCTGATCATGGATTATCTCAGAGTGGAGAAACTGAAGGTTCCAGTGATGGAAGTGATGGGAATACAGCAGGGGCAGATCAAACTAGAAGGAAAAGAAGCCGGGAGGGAACACCACCTATAGGTGGAGATGGGAAAACTGAGACACAGGCCACTTCAGCTCCTTCTGCAGAGGTAAATGCAGGTTCTGATAAGGTGTTGGGTGTTGCTGTCCCTCCCACTAGTGTCACAGGAAAATTGGCAGGAGCTGTACTTTCTCCTAGAATGAGCACAGCATTGGAGCTCAGAAATCCTCCTAGTGTGAATGCAAAAACTAGTCCGAGTAGCATCCCTCAACCTGGTGCTATGGTGCCTTCTGACACATGGATACTGAATGAAAGGGAGATAAAACGTGAGAGGAGAAAACAGTCTAATCGAGAATCTGCAAGAAGGTCAAGGTTGAGGAAGCAGGCTGAGACCGAAGAACTTGCACTGAAAGTTGAAAGCTTGAATACTGAGAATTCGGTACTTAAATCTGAAATTAATCGCTTAAGAGAGAATTCAGAGAAACTGAAGCTTGAAAATGCCACATTAATGGAGAAACTAAAAAGCGCACAGTTAGAACAAGCAGAAGATACACATTTGAATAAGGTCGACGACAAGAGAGTCCTGCCTGTCAGCACAGAGAACCTACTTTCCAGAGTCAATAATTCAGGTTCTGTCGACAGGAGCACTGAGGAAGAAGGCGACATGTACGAGAAAAACACAAACACTGGCGCAAAGCTGCACCAACTTCTGGATACGAGTCCCAGGGCAGATGCAGTGGCTGCTGGATGA 1293 47.41 MGNEEEGKSPKPEKPTSPPPPDQANIHVYPDWAAMQAYYGPRVTLPPYYNSAMASGHAPHPYIWGPPQPMMPPYGPPYAAIYSPGGVYPHPAVPLGSHSHGHGVQSSPVVSEALAAPPLSIETPAKSSGNTDRGLMKKLKGFDGLAMSIGNGNGESTEGGSDHGLSQSGETEGSSDGSDGNTAGADQTRRKRSREGTPPIGGDGKTETQATSAPSAEVNAGSDKVLGVAVPPTSVTGKLAGAVLSPRMSTALELRNPPSVNAKTSPSSIPQPGAMVPSDTWILNEREIKRERRKQSNRESARRSRLRKQAETEELALKVESLNTENSVLKSEINRLRENSEKLKLENATLMEKLKSAQLEQAEDTHLNKVDDKRVLPVSTENLLSRVNNSGSVDRSTEEEGDMYEKNTNTGAKLHQLLDTSPRADAVAAG* 431
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 18416541 18420857 - Vvi15g772 Vvi15g772 777464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g772 430 Pfam Disordered region downstream of MFMR 132 266 - -
Vvi15g772 430 MobiDBLite consensus disorder prediction 385 430 - -
Vvi15g772 430 MobiDBLite consensus disorder prediction 147 229 - -
Vvi15g772 430 Pfam bZIP transcription factor 285 347 IPR004827 GO:0003700|GO:0006355
Vvi15g772 430 SMART brlzneu 285 349 IPR004827 GO:0003700|GO:0006355
Vvi15g772 430 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 292 307 IPR004827 GO:0003700|GO:0006355
Vvi15g772 430 PANTHER G-BOX-BINDING FACTOR 3-RELATED 1 430 IPR044827 GO:0003700|GO:0006355|GO:0043565
Vvi15g772 430 PANTHER G-BOX-BINDING FACTOR 3 1 430 - -
Vvi15g772 430 MobiDBLite consensus disorder prediction 283 311 - -
Vvi15g772 430 Coils Coil 319 360 - -
Vvi15g772 430 MobiDBLite consensus disorder prediction 204 218 - -
Vvi15g772 430 MobiDBLite consensus disorder prediction 254 274 - -
Vvi15g772 430 MobiDBLite consensus disorder prediction 254 311 - -
Vvi15g772 430 MobiDBLite consensus disorder prediction 1 26 - -
Vvi15g772 430 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 287 350 IPR004827 GO:0003700|GO:0006355
Vvi15g772 430 SUPERFAMILY Leucine zipper domain 288 344 IPR046347 GO:0003700|GO:0006355
Vvi15g772 430 Gene3D - 288 342 - -
Vvi15g772 430 CDD bZIP_plant_GBF1 290 338 IPR045314 GO:0003700|GO:0006355
Vvi15g772 430 MobiDBLite consensus disorder prediction 150 184 - -
Vvi15g772 430 Pfam G-box binding protein MFMR 1 94 IPR012900 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi2g96 Vvi15g772 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14095 PF16596 MFMR_assoc 5.60E-37 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g772 K09060 - vvi:100248302 790.03