Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g801 ATGGGGGGTTGCTGTTGTTCTTCCAGGAAAACTCAATTGCGTGGAACACCTGTATATTATTATTGTCCACCAACCCTACAAGAGCACGAGTTCTTGACATCTCATAATGGTGCAGCCTCTGCATTTGCTGCAGAACTCTTGGTTGATTTGAATCTGCAAACATCAATTCCTGACACTTACCGGCCCCCGCCTGCACCTATTCCATATGATGTGGTTCTCGGACATCCAAGATCAACTGACTGTGACCCTGTCGGAGAAACAATTAATGGTAGTAAAGGTCTCAGAGTGTCAGACTGCAAAACTCAAGCTAGTTCTTTGCCTACTTCACCAAGGAAGTTTGAACTTCCAATATCAAATGAACCTAATTTTTTACCATTGGAAGAAGATGATGCTTGTCCCATTTGTCTTGAAGAGTATGATTTGGAGAACCCAAAAACAATCACAAAATGCAACCATCATTTTCATCTTTCGTGCATTCTTGAGTGGATGGAAAGAAGTGAAACCTGCCCTGTGTGTGATCAGGAAATGATACTTGAAGATACCATGATTATGTAG 555 41.8 MGGCCCSSRKTQLRGTPVYYYCPPTLQEHEFLTSHNGAASAFAAELLVDLNLQTSIPDTYRPPPAPIPYDVVLGHPRSTDCDPVGETINGSKGLRVSDCKTQASSLPTSPRKFELPISNEPNFLPLEEDDACPICLEEYDLENPKTITKCNHHFHLSCILEWMERSETCPVCDQEMILEDTMIM* 185
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 18650539 18655050 - Vvi15g801 Vvi15g801 777493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g801 184 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 126 182 IPR013083 -
Vvi15g801 184 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHB1A-RELATED 1 182 - -
Vvi15g801 184 Pfam Ring finger domain 131 172 IPR001841 -
Vvi15g801 184 ProSiteProfiles Zinc finger RING-type profile. 132 173 IPR001841 -
Vvi15g801 184 SUPERFAMILY RING/U-box 126 177 - -
Vvi15g801 184 SMART FANCL_C_2 128 181 - -
Vvi15g801 184 SMART ring_2 132 172 IPR001841 -
Vvi15g801 184 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 1 182 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g801 - - vvi:100256755 396.356