Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g811 ATGAGTGAACCGGATGTTAGTAATAGTGGTGTTATGGGTAGTGATTGGTTGGATAAGGTTAAGGATGTTTGGCAGTCTACAGTCGATGCAGCGGCTTATAGAGGGCAAAAGGCTAAAGAAACTTCTGATGAACTGGCACCTTATGTTGACCAGCTTTTGAGGAGATTTCATAAGTATGCAACCCAAGGATCAGCTGTATTACTACTAGGAAGCTTACCTGAGGAGCAAGTTCCATATGAGAAAAGTTTTTGGAGTGCTTTGGAGGATCCAGTGCGATATCTAATCACCTTCATATCATTTACTCAAATAGGCACGATGATAGCACCAACCACAATTGCATCACAATACATTGGACCAGCTTGGAGGGGTGCACTTATCCTGTCATTTGTATGGTTTCTACATCGTTGGAAAACCAATGTGTTTGCTCGTGCTTTGGCTGCTCAGTCTGTAGTGGGGCTTGATCGAGAGAAGTTGCTAGCACTTGACAAACTTTCATCTGTTGGTCTATTTGTCCTTGGATTGATGGCATTAGCGGAGGCATGTGGGGTAGCTGTTCAATCTATTTTGACTGTTGGTGGCATAGGAGGAGTGGCTACTGCTTTTGCATCTAGAGACATTCTTGGGAATGTGCTAAGTGGTTTGTCTATGCAGTTCTCAAAGCCATTCTCACTTGGAGATACAATAAAAGCTGGATCCATAGAAGGTCAAGTTGTAGAAATGGGACTCACTACCACATCATTGCTGAATGCTGAGAAATTTCCTGTTATAGTTCCAAATTCGCTTTTTTCTAGTCAGGTAATTGTGAATAAATCACGGGCACAATGGCATGCTATGGCCACCAAAATTCCTTTGCAAAGCGACAATCTGGACAAGATTCCCCAGATATCAGATGATATAAAGAACATGCTAAGATCAAACTCAAAAATTTTCTTGGGAAAGGAGGCCCCTTACTGTTTCCTGTCTAGAGTAGAAAGGTCATATGCTGAGCTGACTATTGGATGCAATCTCAAACATATGAGCAAAGACGAGTTATACTCTACAGAACAAGATATTCTTCTGCAGTCGGTCCGTATAATTAAGCAGCATGGTTCTACATTGGGTAGCACTTTCTCCATGTAA 1119 41.91 MSEPDVSNSGVMGSDWLDKVKDVWQSTVDAAAYRGQKAKETSDELAPYVDQLLRRFHKYATQGSAVLLLGSLPEEQVPYEKSFWSALEDPVRYLITFISFTQIGTMIAPTTIASQYIGPAWRGALILSFVWFLHRWKTNVFARALAAQSVVGLDREKLLALDKLSSVGLFVLGLMALAEACGVAVQSILTVGGIGGVATAFASRDILGNVLSGLSMQFSKPFSLGDTIKAGSIEGQVVEMGLTTTSLLNAEKFPVIVPNSLFSSQVIVNKSRAQWHAMATKIPLQSDNLDKIPQISDDIKNMLRSNSKIFLGKEAPYCFLSRVERSYAELTIGCNLKHMSKDELYSTEQDILLQSVRIIKQHGSTLGSTFSM* 373
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 18773148 18778109 + Vvi15g811 Vvi15g811 777503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g811 372 SUPERFAMILY Mechanosensitive channel protein MscS (YggB), transmembrane region 122 203 IPR011014 GO:0016020
Vvi15g811 372 Gene3D - 121 220 - -
Vvi15g811 372 Pfam Mechanosensitive ion channel 163 363 IPR006685 GO:0016020|GO:0055085
Vvi15g811 372 PANTHER YNAI-RELATED MECHANOSENSITIVE ION CHANNEL 6 53 - -
Vvi15g811 372 PANTHER YNAI-RELATED MECHANOSENSITIVE ION CHANNEL 51 371 - -
Vvi15g811 372 SUPERFAMILY Sm-like ribonucleoproteins 205 270 IPR010920 -
Vvi15g811 372 Gene3D - 221 269 IPR023408 -
Vvi15g811 372 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 1, MITOCHONDRIAL-RELATED 51 371 - -
Vvi15g811 372 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 1, MITOCHONDRIAL-RELATED 6 53 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g811 K22047 - vvi:100261915 711.835