Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g817 ATGTCAGTATACGACGCTGCGTTTTTGAACAGTGAACTCTCGAAGCCGACTTCTATCTTTGGGCTCCGGCTATGGGTAGTGATAGGAATCTTCGTCGGAGCCGTCATTGTGATTATTTTGTTCCTGCTGTCCCTCTGCATCACTTCTCGCCGCCGGAGACCTCCTAGTTCTAGTAAGCTTGGCGCAGGCGAGTTTACTCCGGTGGTGTCGAAGGAGATTCAGGAGATCGTTCACGAAGCTGCTCCCGACCACCGGCCGGTGCTGCCTCCAGCGTCGGAGATCCAGATCGACATTGGGAAATCAGAGCACCGCGTGGTGTTCTCCGACCGGCTGTCGTCGCAGGCGAGCGGGGAGAGCCGGGCGACGAGCGTGACTGAAACGGCGTCATTAGGGGGTGGGCCGCCCGAGGTGTCGCACCTGGGGTGGGGACGGTGGTACACGTTGAGAGAGCTTGAAGCGGCGACGAACGGTTTGGCTGACGAAAATGTGATCGGGGAAGGAGGTTATGGAATTGTCTATAGAGGTGTGCTGGCTGATAACACGAGAGTGGCTGTGAAGAACTTGTTGAATAACAGAGGCCAAGCTGAGAAGGAATTCAAAGTGGAGGTTGAAGCCATAGGCCGGGTCCGGCACAAGAATCTTGTTAGGTTGCTGGGATACTGTGCTGAGGGAGCTTACAGGATGCTTGTGTATGAGTATGTGGACAATGGTAATTTGGACCAGTGGCTTCATGGGGATGTAGGGGAAGTCAGCCCTCTGACATGGGATATTCGGATTAACATTATATTAGGAACAGCCAAAGGATTGGCCTATCTTCATGAGGGTCTTGAACCAAAGGTTGTCCATCGAGATGTAAAATCTAGCAACATACTACTTGATCGCCAATGGAACTCTAAGGTGTCTGATTTTGGGCTGGCAAAGCTCTTATGTTCTGAGATAAGTTATGTAACGACTCGTGTGATGGGAACATTCGGGTATGTTGCACCAGAATATGCTTGCACTGGTATGCTGAATGAAAAAAGCGATGTTTATAGCTTTGGAATTCTTATTATGGAGATAATTTCAGGCAGAAATCCTGTTGATTATAGCCAAGCACCTGGAGAGGTGAATTTGGTGGATTGGTTAAAGACAATGGTGGGAAATCGAAAATCTGAGGAAGTCGTGGACCCTAAGTTACCTGAGATGCCTTCTTCAAAAGCACTCAAACGTGTTCTTTTAGTTGCTCTCCGGTGTGTTGATCCTGATGCAACAAAGAGGCCCAAAATGGGACATGTAATCCACATGCTTGAGGCCGATGACCTACTATTCCGAGATGAGCGCCGCATTGGCAGAGAATCATCCCATTCCCATCACGATTATCAGCAAGAGAATCATGCTAATAGGAAAATAGACAATAAACAGTTGGATGAAGGGGCTTGTGACTCAAGTGAATGTGCCGACAGTGGAAGGAGCCAATACCCACAAACTAAATGGAGATAA 1479 49.02 MSVYDAAFLNSELSKPTSIFGLRLWVVIGIFVGAVIVIILFLLSLCITSRRRRPPSSSKLGAGEFTPVVSKEIQEIVHEAAPDHRPVLPPASEIQIDIGKSEHRVVFSDRLSSQASGESRATSVTETASLGGGPPEVSHLGWGRWYTLRELEAATNGLADENVIGEGGYGIVYRGVLADNTRVAVKNLLNNRGQAEKEFKVEVEAIGRVRHKNLVRLLGYCAEGAYRMLVYEYVDNGNLDQWLHGDVGEVSPLTWDIRINIILGTAKGLAYLHEGLEPKVVHRDVKSSNILLDRQWNSKVSDFGLAKLLCSEISYVTTRVMGTFGYVAPEYACTGMLNEKSDVYSFGILIMEIISGRNPVDYSQAPGEVNLVDWLKTMVGNRKSEEVVDPKLPEMPSSKALKRVLLVALRCVDPDATKRPKMGHVIHMLEADDLLFRDERRIGRESSHSHHDYQQENHANRKIDNKQLDEGACDSSECADSGRSQYPQTKWR* 493
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 18836125 18839407 - Vvi15g817 Vvi15g817 777509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g817 492 Coils Coil 178 198 - -
Vvi15g817 492 Pfam Protein kinase domain 160 427 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi15g817 492 ProSiteProfiles Protein kinase domain profile. 158 435 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi15g817 492 PANTHER OS01G0323000 PROTEIN 1 463 - -
Vvi15g817 492 CDD STKc_IRAK 164 430 - -
Vvi15g817 492 MobiDBLite consensus disorder prediction 111 129 - -
Vvi15g817 492 Gene3D Phosphorylase Kinase; domain 1 135 233 - -
Vvi15g817 492 MobiDBLite consensus disorder prediction 478 492 - -
Vvi15g817 492 MobiDBLite consensus disorder prediction 445 492 - -
Vvi15g817 492 SMART serkin_6 158 436 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi15g817 492 ProSitePatterns Protein kinases ATP-binding region signature. 164 186 IPR017441 GO:0005524
Vvi15g817 492 PANTHER BNACNNG08720D PROTEIN 1 463 - -
Vvi15g817 492 MobiDBLite consensus disorder prediction 445 473 - -
Vvi15g817 492 MobiDBLite consensus disorder prediction 111 132 - -
Vvi15g817 492 SUPERFAMILY Protein kinase-like (PK-like) 136 430 IPR011009 -
Vvi15g817 492 Gene3D Transferase(Phosphotransferase) domain 1 234 442 - -
Vvi15g817 492 ProSitePatterns Serine/Threonine protein kinases active-site signature. 280 292 IPR008271 GO:0004672|GO:0006468
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76254 PF00069 Pkinase 1.40E-45 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g817 - - vvi:100852854 962.214