Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g829 ATGGATGGAGATGGAGACCACGCCCCGCCACCACCACCACCACCACTATTGCCATTGCCATCTCAAGCCTCTTCTTTCCTCTTCACACCCTCATTGCCATCCTCCTCAATGCACCCACATCTTCAACTCCCACCACCACCACTGCCGCCACTGCAAGCTCAAATCCTTGGAGATATTGACTGGGCTACCCTTCTCTCCGCCCAAACCGGGCTCAGCGACCTTTACCCAAGAGCTGAAGGCACCTCTTCTGTAATGGCCGAGGAAGAAAAGGGCAGCATCAAGGATAGGAGGAAGGGTGTTAGGACGACGAGAAAAGCAACCCGACCGCGGTTCGCCTTTCAGACGAGGAGCGTGGATGATATTCTTGATGATGGATATCGCTGGAGGAAGTATGGGCAGAAAGCTGTGAAGAACAGCATCTATCCCAGGAGCTACTATCGCTGTACACATCACACATGCGATGTGAAGAAACAGGTACAGAGGCTCTCAAAGGATACAAGCGTTGTGGTGACAACATATGAAGGCATCCACAACCATCCCTGTGAGAAGCTGATGGAAACCCTAAGTCCTCTCTTGAAGCAAATACAGTTCCTCTCTAGATTCTAA 606 51.32 MDGDGDHAPPPPPPPLLPLPSQASSFLFTPSLPSSSMHPHLQLPPPPLPPLQAQILGDIDWATLLSAQTGLSDLYPRAEGTSSVMAEEEKGSIKDRRKGVRTTRKATRPRFAFQTRSVDDILDDGYRWRKYGQKAVKNSIYPRSYYRCTHHTCDVKKQVQRLSKDTSVVVTTYEGIHNHPCEKLMETLSPLLKQIQFLSRF* 202
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 18940953 18942146 + Vvi15g829 Vvi15g829 777521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g829 201 Gene3D WRKY domain 106 181 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi15g829 201 MobiDBLite consensus disorder prediction 22 38 - -
Vvi15g829 201 MobiDBLite consensus disorder prediction 1 20 - -
Vvi15g829 201 SMART WRKY_cls 122 181 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi15g829 201 Pfam WRKY DNA -binding domain 123 180 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi15g829 201 ProSiteProfiles WRKY domain profile. 117 182 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi15g829 201 MobiDBLite consensus disorder prediction 1 49 - -
Vvi15g829 201 PANTHER WRKY TRANSCRIPTION FACTOR 43-RELATED 76 197 - -
Vvi15g829 201 MobiDBLite consensus disorder prediction 80 105 - -
Vvi15g829 201 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 76 197 IPR044810 GO:0003700
Vvi15g829 201 SUPERFAMILY WRKY DNA-binding domain 116 181 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14097 PF03106 WRKY 8.90E-25 CL0274 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g829 - - vvi:100267186 347.051