Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g833 ATGGAGGAAGATTGGGATCTGCAAGCGGTGGTCAGAGGCTGCGCCACCGCCACCGTCGCCTCTGCCGCCACCACGACGACCACAGCTACTACCAGTGATGCAGCTGCTTTGGATCTTCATAGGAGTTCTTGCTTTTCTCCGTTTGATGTGGTGGAGCAAGCTCATCATCATGACGGCCATCTTCTCTGCTTTCCAGATCCGTTCGAGACCAGGAGGGAAGCTTTTGTGGAGGAATTGCATGATCTTTGCAGACCCTTCTTCCCCAAATCTCAGCCTATCTCTCCCCGGACTATACCCATATCTTCTCTCTCTGTTCTAGGAGGAGGATTCAGTGATCAAACCCACCAAATTCAGCAGCAACAGAAGCAAGACCCACCACCCTCAAAGCACTCTCATGCAAGCTCTGTGCCCTCCACTACGCATTCTCAGAGCCCAAGATCCAAGCGAAGAAAGAATCAGATGAAGAAGGTTTGTCACATACCAGCTGAGGGGTTGTCTTCCGACATGTGGGCTTGGAGAAAGTATGGGCAAAAACCCATCAAAGGTTCTCCATATCCAAGGGGTTATTACAGATGTAGCAGTTCAAAGGGGTGTTTGGCCCGAAAACAGGTGGAGCGAAACAGATCCGACCCAGATATGTTCATCGTCACCTACACAGCAGAGCACAACCACCCTATGCCCACCCACAGGAACTCTCTCGCCGGAAGCACCCGCCAGAAGCCGGTGACCCCTCCTGCAGCAGCCACCACCACCGCCTCCGCTGACGCCGTAAAACCCTCGGCCAAACCCGCATGTTCCTCGCCGGCGACTTCCGCGGACGATGAGCTTGTACAGCAAAGCACAAGCGTGCAGAGCAAAGATTTGGTGGAAGACGAGGAAGACGACGAGCTGGGGTTCTCCGACACGGCCGTGGACGACGATTTCTTCATGGGGTTGGAGGAACTCGCCGAACAAGTCACCGGAGACTGCTTCCCCGATCACTTCCCGCCCAGCTTCCCCATTCCTTGGCTGGCCAACAATGCTGCAACAGCCGCCGGCGGGATCTGA 1047 55.01 MEEDWDLQAVVRGCATATVASAATTTTTATTSDAAALDLHRSSCFSPFDVVEQAHHHDGHLLCFPDPFETRREAFVEELHDLCRPFFPKSQPISPRTIPISSLSVLGGGFSDQTHQIQQQQKQDPPPSKHSHASSVPSTTHSQSPRSKRRKNQMKKVCHIPAEGLSSDMWAWRKYGQKPIKGSPYPRGYYRCSSSKGCLARKQVERNRSDPDMFIVTYTAEHNHPMPTHRNSLAGSTRQKPVTPPAAATTTASADAVKPSAKPACSSPATSADDELVQQSTSVQSKDLVEDEEDDELGFSDTAVDDDFFMGLEELAEQVTGDCFPDHFPPSFPIPWLANNAATAAGGI* 349
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 18957230 18958817 - Vvi15g833 Vvi15g833 777525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g833 348 ProSiteProfiles WRKY domain profile. 161 227 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi15g833 348 MobiDBLite consensus disorder prediction 109 155 - -
Vvi15g833 348 MobiDBLite consensus disorder prediction 109 143 - -
Vvi15g833 348 Gene3D WRKY domain 150 220 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi15g833 348 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 1 347 IPR044810 GO:0003700
Vvi15g833 348 SMART WRKY_cls 166 226 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi15g833 348 MobiDBLite consensus disorder prediction 264 285 - -
Vvi15g833 348 MobiDBLite consensus disorder prediction 224 256 - -
Vvi15g833 348 Pfam WRKY DNA -binding domain 168 225 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi15g833 348 MobiDBLite consensus disorder prediction 220 296 - -
Vvi15g833 348 PANTHER WRKY TRANSCRIPTION FACTOR 22-LIKE 1 347 - -
Vvi15g833 348 SUPERFAMILY WRKY DNA-binding domain 164 227 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi15g833 Vvi16g787 ECH
Vvi2g45 Vvi15g833 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14098 PF03106 WRKY 2.60E-25 CL0274 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g833 K13425 - vvi:100256849 637.876