Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi15g833 | ATGGAGGAAGATTGGGATCTGCAAGCGGTGGTCAGAGGCTGCGCCACCGCCACCGTCGCCTCTGCCGCCACCACGACGACCACAGCTACTACCAGTGATGCAGCTGCTTTGGATCTTCATAGGAGTTCTTGCTTTTCTCCGTTTGATGTGGTGGAGCAAGCTCATCATCATGACGGCCATCTTCTCTGCTTTCCAGATCCGTTCGAGACCAGGAGGGAAGCTTTTGTGGAGGAATTGCATGATCTTTGCAGACCCTTCTTCCCCAAATCTCAGCCTATCTCTCCCCGGACTATACCCATATCTTCTCTCTCTGTTCTAGGAGGAGGATTCAGTGATCAAACCCACCAAATTCAGCAGCAACAGAAGCAAGACCCACCACCCTCAAAGCACTCTCATGCAAGCTCTGTGCCCTCCACTACGCATTCTCAGAGCCCAAGATCCAAGCGAAGAAAGAATCAGATGAAGAAGGTTTGTCACATACCAGCTGAGGGGTTGTCTTCCGACATGTGGGCTTGGAGAAAGTATGGGCAAAAACCCATCAAAGGTTCTCCATATCCAAGGGGTTATTACAGATGTAGCAGTTCAAAGGGGTGTTTGGCCCGAAAACAGGTGGAGCGAAACAGATCCGACCCAGATATGTTCATCGTCACCTACACAGCAGAGCACAACCACCCTATGCCCACCCACAGGAACTCTCTCGCCGGAAGCACCCGCCAGAAGCCGGTGACCCCTCCTGCAGCAGCCACCACCACCGCCTCCGCTGACGCCGTAAAACCCTCGGCCAAACCCGCATGTTCCTCGCCGGCGACTTCCGCGGACGATGAGCTTGTACAGCAAAGCACAAGCGTGCAGAGCAAAGATTTGGTGGAAGACGAGGAAGACGACGAGCTGGGGTTCTCCGACACGGCCGTGGACGACGATTTCTTCATGGGGTTGGAGGAACTCGCCGAACAAGTCACCGGAGACTGCTTCCCCGATCACTTCCCGCCCAGCTTCCCCATTCCTTGGCTGGCCAACAATGCTGCAACAGCCGCCGGCGGGATCTGA | 1047 | 55.01 | MEEDWDLQAVVRGCATATVASAATTTTTATTSDAAALDLHRSSCFSPFDVVEQAHHHDGHLLCFPDPFETRREAFVEELHDLCRPFFPKSQPISPRTIPISSLSVLGGGFSDQTHQIQQQQKQDPPPSKHSHASSVPSTTHSQSPRSKRRKNQMKKVCHIPAEGLSSDMWAWRKYGQKPIKGSPYPRGYYRCSSSKGCLARKQVERNRSDPDMFIVTYTAEHNHPMPTHRNSLAGSTRQKPVTPPAAATTTASADAVKPSAKPACSSPATSADDELVQQSTSVQSKDLVEDEEDDELGFSDTAVDDDFFMGLEELAEQVTGDCFPDHFPPSFPIPWLANNAATAAGGI* | 349 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
15 | 18957230 | 18958817 | - | Vvi15g833 | Vvi15g833 | 777525 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi15g833 | 348 | ProSiteProfiles | WRKY domain profile. | 161 | 227 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Vvi15g833 | 348 | MobiDBLite | consensus disorder prediction | 109 | 155 | - | - | |
Vvi15g833 | 348 | MobiDBLite | consensus disorder prediction | 109 | 143 | - | - | |
Vvi15g833 | 348 | Gene3D | WRKY domain | 150 | 220 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Vvi15g833 | 348 | PANTHER | WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED | 1 | 347 | IPR044810 | GO:0003700 | |
Vvi15g833 | 348 | SMART | WRKY_cls | 166 | 226 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Vvi15g833 | 348 | MobiDBLite | consensus disorder prediction | 264 | 285 | - | - | |
Vvi15g833 | 348 | MobiDBLite | consensus disorder prediction | 224 | 256 | - | - | |
Vvi15g833 | 348 | Pfam | WRKY DNA -binding domain | 168 | 225 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Vvi15g833 | 348 | MobiDBLite | consensus disorder prediction | 220 | 296 | - | - | |
Vvi15g833 | 348 | PANTHER | WRKY TRANSCRIPTION FACTOR 22-LIKE | 1 | 347 | - | - | |
Vvi15g833 | 348 | SUPERFAMILY | WRKY DNA-binding domain | 164 | 227 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 |
Event-related genes

Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
14098 | PF03106 | WRKY | 2.60E-25 | CL0274 | Vvi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi15g833 | K13425 | - | vvi:100256849 | 637.876 |