Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g852 ATGATCTTTGCCCTTGTCTACTGCACTGCTGGTATCTCAGGAGGACACATAAACCCAGCGGTGACATTTGGCCTGCTCTTGGCCAGAAAGCTGTCTCTAACCCGAGCCGTGTTCTACATGATCATGCAATGCCTGGGCGCCATCTGTGGCGCAGGTGTGGTGAAGGGGTTCCAGGGACATCAGTATGAGGTGTTGGGTGGTGGAGCCAATGTTGTGGCTGCTGGCTATTCCAAAGGCGATGGGCTTGGTGCTGAGATAGTTGGCACTTTTGTTCTTGTCTACACTGTTTTCTCTGCAACTGATGCCAAGAGAAATGCCAGAGACTCACATGTCCCTATTTTGGCTCCTCTCCCCATTGGGTTTGCAGTGTTCTTGGTTCATCTGGCAACCATCCCCATCACCGGAACCGGCATCAACCCTGCTAGGAGTCTGGGGGCCGCCATCATCTACAACAGAGAGCATGCCTGGGATGACATGTGGATTTTCTGGGTTGGACCCTTCATTGGAGCTGCTCTTGCTGCCTTGTACCACCAGATAGTAATCAGAGCCATCCCATTCAAGACCAGAGCCTGA 573 52.53 MIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMIMQCLGAICGAGVVKGFQGHQYEVLGGGANVVAAGYSKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNREHAWDDMWIFWVGPFIGAALAALYHQIVIRAIPFKTRA* 191
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 19199214 19206926 - Vvi15g852 Vvi15g852 777544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g852 190 Gene3D Glycerol uptake facilitator protein. 1 188 IPR023271 -
Vvi15g852 190 TIGRFAM MIP: MIP family channel proteins 2 177 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi15g852 190 CDD MIP 1 180 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi15g852 190 SUPERFAMILY Aquaporin-like 2 182 IPR023271 -
Vvi15g852 190 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 189 IPR034294 -
Vvi15g852 190 Pfam Major intrinsic protein 1 177 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi15g852 190 PANTHER AQUAPORIN PIP1-2-RELATED 1 189 - -
Vvi15g852 190 ProSitePatterns MIP family signature. 16 24 IPR022357 -
Vvi15g852 190 PRINTS Major intrinsic protein family signature 35 54 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi15g852 190 PRINTS Major intrinsic protein family signature 84 102 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi15g852 190 PRINTS Major intrinsic protein family signature 120 142 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi15g852 190 PRINTS Major intrinsic protein family signature 160 180 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi2g311 Vvi15g852 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g852 K09872 - vvi:100240701 375.941