Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g857 ATGGCCGTGGTGAGTCCAGTTCCGGCAATTTCACAGCAGCTTGATCACGTACGGTTACATGAAATTGGGGTCTCTGCGGTGATGTCAAGCACTGGAGAAATCGTGGAGGAACAGCCGCTGGCTCTTGTGGTCGAAGATAAGATATTTGTGGCAGTTGGCAAAGAAGTGAAGGAGAGTAAATCGATTCTGGTGTGGGCGTTACAGAACTCTGGAGGCAAAAGAATTAGTATAGTTCATGTTCATCAGCCGGCCCAGATGATCCCTATAATGGGTGGGAAATTTCCTGCCAGCAAACTGAAGGAGCAGGAGGTCAAAGCCTACCGAGATCTTGAGAGGCAAGATATGCACAAGATTCTAAATGACTACCTTCTCATTTGTAGGAAAGCAGGGGTGAGAGCGGAGAAACTGTATATCGAGTCAGAGAATGTGGAGAAGGGTATTTTGGAACTCATTTCTGAACATGGGATCAAGAAACTGGTCGTGGGTGCAGCAGCGGATAAGCACTACTCAAGGAGAATGTTAGAGCCGAAGTCAAAGAAGGCAGCATATGTGCGGGATAAGGCTCCTTTATTCTGTCATATTTGGTTCGTATGCAGGGGGCACCTCATCTACACAAGGGAAGGTAGCTTGAATGGGGCTGATATAGAGCTCAGAACACCTCCATCACAGCAAGCGAGTCCAAACAATGAAACAGGGCAATCAAATACCTTCAGATCAATGTCCGTATCTCTGGGGCAGAATCATCCATCAAAACTTGTCAATCCAGGTCAAGACTTACCCAGAACAATGTCAGTCCCCGTGAGAATTACAGTGCTTTCTTCCCCTGATGGTACTGGAGGGGTGTCTGCACCATGGAGCAGGATGGGTAGGGAAGGGAGTTCCGACTATTGGGATGGGATATCAAAGAGAAGTCCTTCTCAGGCTTCAGGTTTTTCTACGTGCTCCTCAGGTGACATGGCTGGTGAGGTAAATGAAGATGGATTAGAGTCACGTGCGTCTCCTGTAGCCAAGCAGGCTCTTCACCATTCATCTCCTCCCAGTGTACTGGAAGAAAATATTTATGATCAACTTGAGCAAGCAATGGTGGAAGCTGAAAATTCCAGGCGGGAAGCTTTTCAAGAGTCTCTTAGGCGCAGCAAAGCTGAAAAAGATGCTATTGAGGCTATTCGCAGGGCTAAAGAAGCCGAAAGATCATTTAGTGAGGAGTTGAAACTGCGGAGAGACATTGAGGAGGCATTACAAGCCCAAGGAAAAGAACTTGAAAGCCTGAGGAACAAGCAACAAGAAATCATGGAAGAACTGAAGATTTCTTTGAATCATAAGTCGCTTCTGGAGAATCAAATTGCAGATTCTGAGCAGGTGGTAAAGGAGTTGGAGGAGAAGATTATCGCTGCCGTGGAGCTGTTACAGAATTACAAGAAAGAACGGGATGAGTTGCAGATTGAGCGTGACAATGCAATCAAAACAGCTGAGGAACTCAAGAAAAAGGGAGCATCAACTTCACATACGCCTCAGTACTTTGCTGAGTTCTCTTTTGCAGAAATTGAGAAAGCAACTCAGAACTTTGATCCATCAGTGAAAATTGGGGAAGGGGGGTATGGAAGCATTTACAAAGGTTGCCTGCGCCATACCCAAGTGGCAATAAAGATGCTGCATTCTGATAGCTTCCAAGGCCCAACAGAATTTCAACAGGAGGTCGACATTTTGAGTAAGTTGAGGCATCCAAATTTGGTAACTCTCATAGGTGCTTGCCCAGAAGCCTGGGCACTCATCTATGAGTATCTTCCAAATGGAAGCCTGGAAGACCGACTCAACTGCAGGGACAACACTCCCCCACTGTCATGGCAAGCTCGTATTCGCATTGCAGCAGAGCTATGCTCCGTGCTCATCTTCCTTCATTCCAATAATCCTGACAGTATAGTGCATGGAGATTTGAAGCCTAGCAATATTCTTCTGGATGCCAACTTTGGGAGCAAGCTTAGCGACTTTGGAATCTGTCGTGTGATCTCTCATGATGGAAATTCGAGCAACAGTGCAACCATGTGTTGCAGAACTGGCCCAAAGGGAACTTTTGCCTATATGGATCCTGAGTTCCTCTCTTCAGGGGAGCTCACTGTAAAGTCAGATGTATACTCATTCGGAATTATATTATTACGGTTGTTAACTGGGAAACCAGCAATTGGGATCACAAAAGAAGTGCAACATGCATTAGATCAGGGAAATTTGAACACCCTGTTGGATCCCTTGGCTGGGGACTGGCCCTTTGTGCAGGCTAAGCAGTTGGCTCTCATGGCACTGAGGTGCTGTGAGATGAACAGGAAGAGCAGGCCAGACCTTGTCTCAGAAGTATGGAGGGTGCTTGAACCCATGAAGGTTTCATGTGGAGCTTCATCATCATCATTTCGGGTCGGTTCTGAAGAGCGTGGCCAGATTCCACCCTACTTCATTTGTCCCATTTTCCAGGAAATCATGCAAGACCCTTGTGTGGCAGCTGATGGGTTCACCTATGAGGCCGAGGCTCTGCGAGGATGGCTTGATGGCGGCCACAGCACTTCACCCATGACAAACCTGAAGCTTGGTCACCTGAATCTTGTCCCCAACCGGGCTCTTCGCTCTGCAATTCAGGAGTGGTTGCAGCAGCCCTGA 2646 47.28 MAVVSPVPAISQQLDHVRLHEIGVSAVMSSTGEIVEEQPLALVVEDKIFVAVGKEVKESKSILVWALQNSGGKRISIVHVHQPAQMIPIMGGKFPASKLKEQEVKAYRDLERQDMHKILNDYLLICRKAGVRAEKLYIESENVEKGILELISEHGIKKLVVGAAADKHYSRRMLEPKSKKAAYVRDKAPLFCHIWFVCRGHLIYTREGSLNGADIELRTPPSQQASPNNETGQSNTFRSMSVSLGQNHPSKLVNPGQDLPRTMSVPVRITVLSSPDGTGGVSAPWSRMGREGSSDYWDGISKRSPSQASGFSTCSSGDMAGEVNEDGLESRASPVAKQALHHSSPPSVLEENIYDQLEQAMVEAENSRREAFQESLRRSKAEKDAIEAIRRAKEAERSFSEELKLRRDIEEALQAQGKELESLRNKQQEIMEELKISLNHKSLLENQIADSEQVVKELEEKIIAAVELLQNYKKERDELQIERDNAIKTAEELKKKGASTSHTPQYFAEFSFAEIEKATQNFDPSVKIGEGGYGSIYKGCLRHTQVAIKMLHSDSFQGPTEFQQEVDILSKLRHPNLVTLIGACPEAWALIYEYLPNGSLEDRLNCRDNTPPLSWQARIRIAAELCSVLIFLHSNNPDSIVHGDLKPSNILLDANFGSKLSDFGICRVISHDGNSSNSATMCCRTGPKGTFAYMDPEFLSSGELTVKSDVYSFGIILLRLLTGKPAIGITKEVQHALDQGNLNTLLDPLAGDWPFVQAKQLALMALRCCEMNRKSRPDLVSEVWRVLEPMKVSCGASSSSFRVGSEERGQIPPYFICPIFQEIMQDPCVAADGFTYEAEALRGWLDGGHSTSPMTNLKLGHLNLVPNRALRSAIQEWLQQP* 882
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 19246284 19253749 - Vvi15g857 Vvi15g857 777549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g857 881 CDD STK_N 47 200 - -
Vvi15g857 881 Gene3D Phosphorylase Kinase; domain 1 507 594 - -
Vvi15g857 881 Coils Coil 406 433 - -
Vvi15g857 881 ProSiteProfiles U-box domain profile. 810 881 IPR003613 GO:0004842|GO:0016567
Vvi15g857 881 SUPERFAMILY Protein kinase-like (PK-like) 500 787 IPR011009 -
Vvi15g857 881 ProSiteProfiles Protein kinase domain profile. 522 791 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi15g857 881 Coils Coil 441 496 - -
Vvi15g857 881 PANTHER OS02G0152300 PROTEIN 43 877 - -
Vvi15g857 881 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 33 43 877 - -
Vvi15g857 881 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 809 881 IPR013083 -
Vvi15g857 881 Pfam Protein kinase domain 525 778 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi15g857 881 Gene3D HUPs 46 189 IPR014729 -
Vvi15g857 881 SMART serkin_6 522 790 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi15g857 881 SMART Ubox_2 814 877 IPR003613 GO:0004842|GO:0016567
Vvi15g857 881 MobiDBLite consensus disorder prediction 214 260 - -
Vvi15g857 881 ProSitePatterns Serine/Threonine protein kinases active-site signature. 640 652 IPR008271 GO:0004672|GO:0006468
Vvi15g857 881 ProSitePatterns Protein kinases ATP-binding region signature. 528 549 IPR017441 GO:0005524
Vvi15g857 881 MobiDBLite consensus disorder prediction 216 253 - -
Vvi15g857 881 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 58 178 - -
Vvi15g857 881 Pfam U-box domain 811 880 IPR003613 GO:0004842|GO:0016567
Vvi15g857 881 SUPERFAMILY RING/U-box 804 880 - -
Vvi15g857 881 CDD STKc_IRAK 528 790 - -
Vvi15g857 881 Gene3D Transferase(Phosphotransferase) domain 1 595 795 - -
Vvi15g857 881 Coils Coil 350 398 - -
Vvi15g857 881 CDD RING-Ubox_WDSUB1_like 815 856 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi15g857 Vvi16g716 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76255 PF00069 Pkinase 6.40E-42 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g857 - - vvi:100243070 1743.01