Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi15g896 | ATGGATCGAAGAGATGCTATGGCGATGCCTGGGTCAGGTTCTTATTATATGCAAAGAGGAATGGCTGGGTCCGGGTCCGGGTCTGGGCCGCAGCCTGGATTACATGGATCACCGGGAATTCGCTCATTATCTAATCCAAGCATGCCATTTCAGCCCAATATTGGAGGTGGTGGCTCTATGGGATCAACATTACCCGTGGAGCCTTCGTCTGTAATCTCCACTCATGGTGTTAATGTGGGTGCACCATCCACATTGTTGCCACCAAGTGAGCCTGTGAAGAGAAAAAGGGGAAGACCCCGAAAATATGGACCTGATGGGACTGTGTCATTGGCATTGTCTCCCTCATCCGCCACTTCTCCTGGGACACTAACCGCATCTACCCAGAAGCGGGGTAGAGGGCGGCCACCAGGAACTGGGAGGAAGCAGCAGCTAGCTTCTCTTGGTGAGTGGCTGTCTGGTTCGGCTGGGATGGGTTTTACTCCACATGTCATCACCGTTGCAGTAGGAGAAGATGTTGCAACGAAAATTATGTCATTTTCACAGCAGGGGCCAAGAGCTATATGCATCTTATCAGCAAATGGAGCTGTATCCACTGTGACCCTTCGTCAGCCTTCAACCTCTGGTGGCACCGTCACATATGAGGGACGTTTTGAGATACTATGTCTGTCAGGCTCTTATTTGCTAACTGATAATGGTGGCTCCCGCAACCGAACTGGTGGTCTAAGTGTCTCCCTTGCTAGTCCTGATGGTCGTGTCATTGGTGGTGGAGTTGGAGGAATGCTTACAGCAGCAAGTCCTGTTCAGGTGATAGTTGGGAGCTTCATATGGGGCAATTCAAAGACAAAGAACAAGATGGGGGAAAGTGTGGAAGGTGCTGGGGATTCAGAACGTCAGACAGTTGATCATCCAATCACTACTCCCACTACTGTTCCAGCCAGTCAAAATCTTACTCCAGCCTCATCGATGGGTGTGTGGCCAGGTTCACGGCAGTTGGATATGCGAAATTCTCCTGTTGACATTGATTTGATGCGTGGCTGA | 1038 | 50.48 | MDRRDAMAMPGSGSYYMQRGMAGSGSGSGPQPGLHGSPGIRSLSNPSMPFQPNIGGGGSMGSTLPVEPSSVISTHGVNVGAPSTLLPPSEPVKRKRGRPRKYGPDGTVSLALSPSSATSPGTLTASTQKRGRGRPPGTGRKQQLASLGEWLSGSAGMGFTPHVITVAVGEDVATKIMSFSQQGPRAICILSANGAVSTVTLRQPSTSGGTVTYEGRFEILCLSGSYLLTDNGGSRNRTGGLSVSLASPDGRVIGGGVGGMLTAASPVQVIVGSFIWGNSKTKNKMGESVEGAGDSERQTVDHPITTPTTVPASQNLTPASSMGVWPGSRQLDMRNSPVDIDLMRG* | 346 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
15 | 19638155 | 19643685 | + | Vvi15g896 | Vvi15g896 | 777588 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi15g896 | 345 | MobiDBLite | consensus disorder prediction | 38 | 80 | - | - | |
Vvi15g896 | 345 | MobiDBLite | consensus disorder prediction | 1 | 143 | - | - | |
Vvi15g896 | 345 | MobiDBLite | consensus disorder prediction | 109 | 131 | - | - | |
Vvi15g896 | 345 | SUPERFAMILY | AF0104/ALDC/Ptd012-like | 159 | 276 | - | - | |
Vvi15g896 | 345 | MobiDBLite | consensus disorder prediction | 282 | 345 | - | - | |
Vvi15g896 | 345 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 | 37 | 324 | - | - | |
Vvi15g896 | 345 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 | 37 | 324 | IPR039605 | GO:0003680 | |
Vvi15g896 | 345 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 161 | 274 | IPR005175 | - | |
Vvi15g896 | 345 | Gene3D | - | 161 | 289 | - | - | |
Vvi15g896 | 345 | CDD | DUF296 | 160 | 274 | IPR005175 | - | |
Vvi15g896 | 345 | MobiDBLite | consensus disorder prediction | 299 | 324 | - | - | |
Vvi15g896 | 345 | SMART | AT_hook_2 | 93 | 105 | IPR017956 | GO:0003677 | |
Vvi15g896 | 345 | SMART | AT_hook_2 | 129 | 141 | IPR017956 | GO:0003677 | |
Vvi15g896 | 345 | ProSiteProfiles | PPC domain profile profile. | 155 | 296 | IPR005175 | - |
Event-related genes

Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi15g896 | - | - | vvi:100265498 | 634.024 |