Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g896 ATGGATCGAAGAGATGCTATGGCGATGCCTGGGTCAGGTTCTTATTATATGCAAAGAGGAATGGCTGGGTCCGGGTCCGGGTCTGGGCCGCAGCCTGGATTACATGGATCACCGGGAATTCGCTCATTATCTAATCCAAGCATGCCATTTCAGCCCAATATTGGAGGTGGTGGCTCTATGGGATCAACATTACCCGTGGAGCCTTCGTCTGTAATCTCCACTCATGGTGTTAATGTGGGTGCACCATCCACATTGTTGCCACCAAGTGAGCCTGTGAAGAGAAAAAGGGGAAGACCCCGAAAATATGGACCTGATGGGACTGTGTCATTGGCATTGTCTCCCTCATCCGCCACTTCTCCTGGGACACTAACCGCATCTACCCAGAAGCGGGGTAGAGGGCGGCCACCAGGAACTGGGAGGAAGCAGCAGCTAGCTTCTCTTGGTGAGTGGCTGTCTGGTTCGGCTGGGATGGGTTTTACTCCACATGTCATCACCGTTGCAGTAGGAGAAGATGTTGCAACGAAAATTATGTCATTTTCACAGCAGGGGCCAAGAGCTATATGCATCTTATCAGCAAATGGAGCTGTATCCACTGTGACCCTTCGTCAGCCTTCAACCTCTGGTGGCACCGTCACATATGAGGGACGTTTTGAGATACTATGTCTGTCAGGCTCTTATTTGCTAACTGATAATGGTGGCTCCCGCAACCGAACTGGTGGTCTAAGTGTCTCCCTTGCTAGTCCTGATGGTCGTGTCATTGGTGGTGGAGTTGGAGGAATGCTTACAGCAGCAAGTCCTGTTCAGGTGATAGTTGGGAGCTTCATATGGGGCAATTCAAAGACAAAGAACAAGATGGGGGAAAGTGTGGAAGGTGCTGGGGATTCAGAACGTCAGACAGTTGATCATCCAATCACTACTCCCACTACTGTTCCAGCCAGTCAAAATCTTACTCCAGCCTCATCGATGGGTGTGTGGCCAGGTTCACGGCAGTTGGATATGCGAAATTCTCCTGTTGACATTGATTTGATGCGTGGCTGA 1038 50.48 MDRRDAMAMPGSGSYYMQRGMAGSGSGSGPQPGLHGSPGIRSLSNPSMPFQPNIGGGGSMGSTLPVEPSSVISTHGVNVGAPSTLLPPSEPVKRKRGRPRKYGPDGTVSLALSPSSATSPGTLTASTQKRGRGRPPGTGRKQQLASLGEWLSGSAGMGFTPHVITVAVGEDVATKIMSFSQQGPRAICILSANGAVSTVTLRQPSTSGGTVTYEGRFEILCLSGSYLLTDNGGSRNRTGGLSVSLASPDGRVIGGGVGGMLTAASPVQVIVGSFIWGNSKTKNKMGESVEGAGDSERQTVDHPITTPTTVPASQNLTPASSMGVWPGSRQLDMRNSPVDIDLMRG* 346
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 19638155 19643685 + Vvi15g896 Vvi15g896 777588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g896 345 MobiDBLite consensus disorder prediction 38 80 - -
Vvi15g896 345 MobiDBLite consensus disorder prediction 1 143 - -
Vvi15g896 345 MobiDBLite consensus disorder prediction 109 131 - -
Vvi15g896 345 SUPERFAMILY AF0104/ALDC/Ptd012-like 159 276 - -
Vvi15g896 345 MobiDBLite consensus disorder prediction 282 345 - -
Vvi15g896 345 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 37 324 - -
Vvi15g896 345 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 37 324 IPR039605 GO:0003680
Vvi15g896 345 Pfam Plants and Prokaryotes Conserved (PCC) domain 161 274 IPR005175 -
Vvi15g896 345 Gene3D - 161 289 - -
Vvi15g896 345 CDD DUF296 160 274 IPR005175 -
Vvi15g896 345 MobiDBLite consensus disorder prediction 299 324 - -
Vvi15g896 345 SMART AT_hook_2 93 105 IPR017956 GO:0003677
Vvi15g896 345 SMART AT_hook_2 129 141 IPR017956 GO:0003677
Vvi15g896 345 ProSiteProfiles PPC domain profile profile. 155 296 IPR005175 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi2g329 Vvi15g896 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g896 - - vvi:100265498 634.024