Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g929 ATGACTGATGAAGAAGCTTCCCTTTTTGACATGTTATGGTTACTGCTAGCAAGTGTTATATTTGTGCCTATATTCCAGAAAATTCCTGGAGGCAGTCCTGTTCTTGGTTACTTGGCTGCTGGTATCTTGATTGGGCCTTATGGTCTCTCTATTATTCGTCATGTACATGGGACCAAAGCGATTGCAGAATTTGGAGTTGTTTTCTTGCTATTTAATATTGGTCTTGAGCTATCTGTTGAAAGGCTGAGTTCCATGAAGAAATATGTTTTTGGATTGGGCACTGCTCAGGTTTTGGTGACGGCGGTGGTGGTTGGCTTGGTTACTCATTTTATATCTGGGCAGCCTGGTCCTGCTGCAATTGTTATTGGGAATGGCCTGGCATTATCCTCTACTGCTGTTGTCCTCCAGGTGCTGCAGGAGCGAGGGGAGAGCACCTCACGTCATGGACGTGCTACATTTTCTGTCTTGCTTTTCCAGGATTTGGCTGTTGTGGTTCTTCTAATACTCATACCTCTGATTTCACCAAATTCATCTAAAGGAGGGATTGGTTTTCAAGCCATTGCTGAAGCTCTCGGACTGGCTGCTGTTAAGGCATTAGTTGCCATTGCTGCCATAATTGCTGGTGGACGCTTGCTACTTAGACCAATTTATAAGCAAATTGCTGAAAATCAAAATGCAGAGATATTTTCTGCCAATACACTTCTTGTTATCTTGGGGACTAGTCTCCTTACAGCCAGGGCAGGCCTTTCCATGGCATTGGGAGCATTTTTGGCTGGTTTGCTTCTTGCAGAAACTGAATTTTCCTTACAGGTTGAATCAGATATTGCTCCATATCGTGGCCTTTTATTGGGTCTCTTCTTCATGACGGTGGGAATGTCTATTGATCCAAAGCTTCTTATTTCAAACTTTCCAGTTATAATGGGGACATTAGGACTCTTAATTGGTGGCAAGGCTTTATTGGTTGCTTTAGTTGGCAAACTTTTTGGCATTTCAATCATATCTGCAATAAGAGTTGGTCTTCTTCTTGCTCCGGGGGGAGAATTTGCTTTTGTGGCTTTTGGTGAAGCCGTTAATCAGGGCATAATGTCTCCTCAGCTATCATCTTTGCTGTTTCTTGTGGTGGGAATTTCTATGGCCCTGACCCCATGGTTAGCTGCTGGAGGACAATTAATTGCGTCTCGTTTTGAGCAGCATGATGTGCGAAGTTTGTTACCTGTTGAGAGTGAGACAGATGATTTGCAAGATCATATTATCATTTGTGGATTTGGACGTGTTGGACAGATCATTGCTCAGCTTCTCTCAGAACGACTAATTCCATTTGTTGCACTTGATGTGAGGAGTGATCGAGTTGCAATGGGGCGTGCCCTCGACCTTCCTGTTTATTTTGGAGATGCTGGTAGTCGAGAGGTTCTCCACAAAGTTGGTGCTGAAAGAGCATGTGCTGCTGCAATAACTCTAGATACTCCTGGTGCAAACTATAGAACTGTTTGGGCCCTGAGCAAGTATTTTCCCAATGTGAAAACATTTGTCCGTGCTCATGATGTTGATCATGGCCTTAATTTGGAAAAGGCTGGGGCAACAGCGGTTGTTCCAGAGACCTTGGAACCAAGTCTGCAGTTAGCTGCTGCTGTTCTTGCACAGGCGAAATTGCCCACATCAGAGATTGCAGCTACAATCAACGAGTTCAGATCCCGCCACCTCTCCGAGCTCACTGAGCTATGTGAAGCAAGCGGAAGCTCCCTTGGCTATGGATTCTCTCGGATCGCGAGTAAATCCAAACCTCAACCCCCTGATTCTTCGGATGAGAACCAGATCACCGAGGGAACATTAGCTGTATGA 1839 44.86 MTDEEASLFDMLWLLLASVIFVPIFQKIPGGSPVLGYLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGTAQVLVTAVVVGLVTHFISGQPGPAAIVIGNGLALSSTAVVLQVLQERGESTSRHGRATFSVLLFQDLAVVVLLILIPLISPNSSKGGIGFQAIAEALGLAAVKALVAIAAIIAGGRLLLRPIYKQIAENQNAEIFSANTLLVILGTSLLTARAGLSMALGAFLAGLLLAETEFSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLISNFPVIMGTLGLLIGGKALLVALVGKLFGISIISAIRVGLLLAPGGEFAFVAFGEAVNQGIMSPQLSSLLFLVVGISMALTPWLAAGGQLIASRFEQHDVRSLLPVESETDDLQDHIIICGFGRVGQIIAQLLSERLIPFVALDVRSDRVAMGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANYRTVWALSKYFPNVKTFVRAHDVDHGLNLEKAGATAVVPETLEPSLQLAAAVLAQAKLPTSEIAATINEFRSRHLSELTELCEASGSSLGYGFSRIASKSKPQPPDSSDENQITEGTLAV* 613
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 19993951 20009808 + Vvi15g929 Vvi15g929 777621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g929 612 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 413 554 IPR036291 -
Vvi15g929 612 Pfam Sodium/hydrogen exchanger family 14 384 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Vvi15g929 612 PANTHER K(+) EFFLUX ANTIPORTER 3, CHLOROPLASTIC 2 612 - -
Vvi15g929 612 MobiDBLite consensus disorder prediction 592 612 - -
Vvi15g929 612 ProSiteProfiles RCK N-terminal domain profile. 416 538 IPR003148 GO:0006813
Vvi15g929 612 Gene3D - 4 392 IPR038770 -
Vvi15g929 612 PANTHER K(+) EFFLUX ANTIPORTER 1, CHLOROPLASTIC-RELATED 2 612 - -
Vvi15g929 612 Pfam TrkA-N domain 417 530 IPR003148 GO:0006813
Vvi15g929 612 Gene3D - 412 576 - -
Vvi15g929 612 TIGRFAM 2a37: transporter, monovalent cation:proton antiporter-2 (CPA2) family 15 295 IPR004771 GO:0006812|GO:0008324|GO:0016021
Vvi15g929 612 MobiDBLite consensus disorder prediction 587 612 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g929 - - vvi:100244810 1075.08