Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1001 ATGGAGAAGGATGCAAATGTTACTGTCTCACTTGTTCCAGCCTCAGAGTTACTCTCTCAGACTATCCTGACTGTCTTTGACACTGTACATGCTGCCAAAGCAGTCATCATTCAAGATGCGAATTTCCAGCAATTCGCAATTTACTTGGAGATGGTCACAGTGGTCCTGAAAGAGTTGGCCAATCTAAAGATAGAGGATTCTGAGAGGTTAAAAATTGCTGTTGCAAATCTTAATCGAGAGATTAAGGTTGCAAAGCAGCTAACTGTGGAGTGTGGGAAGAGAAACAAGATCTATCTCTTAGTCAATTGCCAGAGAATTTCCAAGGACTTAGAGTGTATCACAAAAGAGATTAGTCGGGTTCTAGGCCTTATTCCTGATATTTCATTCAATATTAATGATAAGATTAGTAAACTACGCAAGGATATGTTAGATTCCAAGTATCAAGCAACTGCAGTGGAGGAAGAAATTCTGGAAAAAATTGAAACTGGTATACGGGAGAGGAATGTCGACAAATCCTATGCAAATAATTTGCTCCTCTGTATTGCTGAGGCTGCTGGGATTTCAACTGAGCAGTCAGTATTGAAGAGAGAGTTAGAAGAATTCAAGAGTGAAATAGAGGATGTGAACCTCAGAGAAGACAGTGCAGAAGCTTTAAAAATGGGAAAGATTGTTGCATTGCTTGCAAAAGCAGATGCTGCCACATCTCCTGAGGAGAAAGAAATCAAATATTTTAATCAGCGAAATTCTTTGGGTACGCAACGACTGGAACCTCTACATGCATTCTACTGTTCAATCACTCATGATGTCATGGTGGATCCTGTGGAAACTTCCTCAGGGCAGACATTTGAGAGAAGTGCAATAGAGAAGTGGATTGCAGAAGGGAATAAGCTCTGTCCATTGACAGCGACTCCCTTGGACATGTCAGCTTTACGACCTAACAAAATTCTTCGACAATCAATTGAAGAATGGAAGGATAGGAACACCATGATTATGCTTGCTTCTCTCAAACCTGCACTCCATTCAAATGATGAGCAAGAAGTTCTTCAATCTCTGGGCAAGCTGCATGATCTATGTATTGAACGAGAGTTGCACCGTGAATGGGTAATGATGGAGGAGTACTGTCCAATTCTTATTGGACTTCTTGGTGCAAAAAACCGTGAAATAAGAAAACTTTCTCTAGTCATCCTTTGCATTCTTGCAAAGGATAGCAATGAGAATAAGGAAAGAATTGCTAGAGTGAATAATGCAATTGAATCAATTGTTCGTTCCCTTGCCCGCCAGATTGGGGAAAGCAAGTTAGCGTTGCAATTACTATTGGAGCTATCAAGAAGTAATCTAGTGCGTGACTTCATCGGCAATGTTCAGGGTTGCATATTTCTCTTAGTGACTATCTCCAGTGGTGATGATACTCAAGCTGCCATAGATGCAAAGGAGCTTTTGGAAAATCTCTCTTTTCTTGATCAGAATGTTATTCAGATGGCAAGGGCAAATTATTTTAAACCTTTGTTGCGCCTTCTTTCTTCAGGGCCAGTGAATGCTAAAATGACTGTGGCTGCTACTTTGTCAGAGATTGAGTTAACTGACAATAATAAATTGAGTCTATTTGAAGATGGAGCACTTCAGCCACTTCTAGTATTGCTCTCACATAGCGATATGGAGATGAAGAAAGTGGCTGTTAAAGCTCTTTATAACCTCTCCAGTGTGCCACAAAATGGATTGCGGATGATTAGAGAAGGTGCTGCAGGCCCATTGTTTGAACTTCTCTACCGTCACAGCTTGTCTTCCCCAAGTTTGCGTGGAGAGGTGGCAGTTATCATTATGCACCTTGCAATATCAACCACAACCCTGGAAGCTGATCAAATGCATGTTTCATTGTTGGAATCTGAGGAAGATATATTCAAGCTTTTCTCTCTCATATCCTTGACAGGACCTGACATACAACAAATTATTCTCCGAACTTTTCATGCTATGTGTCAATCTCATTCTGGTTTAGACATCAGAACTAAGTTAAGGCAGCTCTCTTCTGTTCGAGTACTAGTTCAATTATGCGAGTTTGACAACCATACAGTACGTGCAAATGCTGTGAAGCTCTTTTGTTGCTTGACAGAAGATGGTGAAGACAGTACCTTTGTAGAGCATGTGAGCCAGAGATACATAGAGACATTAATCAGAATAATCAAAACTTCTGATAATGTGGAAGAGATTGCTGGTGCAATGAGTATCATCTCTAACCTTCCTAAGGAGGCCCATATAACCCAGTGGCTTCTTGATGCCGGAGCTCTTCAAATCATTTTTACTTGTCTTACTGATGGAAATAGTAGTGCTTCATACAAAAGGCAATTAATTGAGAATGCTGTTGGCGCTCTTTGTCGTTTCACTGTTTCAACAAATCAGAATTGGCAAAAGGAGGTAGCCAAATGTGGTTTTTTCCCAATCCTGCTACAGTTTCTAGATTCTGGAACAGCTTTGACAAAGAGAAATGCAGCAGTTTCACTTAAGCAATTTTCAGAAAGTTCCAATGGCTTAAGCCAACCAGTGAAGAAGCATGGAGCTTTTTGGTGCTGTTTGGCCTCTCGTGAAACTGGTTGCCGAGTGCACTTAGGCATCTGTACAGTTGAGTCCTCATTTTGTCTTTTGGAGGCTAATGCTGTAGAACCCCTAGTGAGGGTGCTTGTGGAACCAGATGTTGGAGCTTGTGAAGCTTCTTTAGATGCACTTTTGACATTGATTGACGGTGAAAGATTGCAAAATGGGAGTAAGGTGCTTTCTGAAGTTAATGCTATTGTTCCAATTATAAGGTTATTGAGTTCATCGTGTACCAAGTTGCAGGAGAAAGCTCTGAAGGCTTTAGAAAGGATCTTTCGACTAATTGATTTCAAACAGAAGTATGGGAATTTAGCCCAAATGCCATTAGTTGACATTACTCAGAGGGGACATGGTGGTATGAAATCCTTAGCTGCCAAAGTACTTGCTCACTTGGATGTGCTCCATGAACAATCTTCTTACTTCTAA 3012 40.77 MEKDANVTVSLVPASELLSQTILTVFDTVHAAKAVIIQDANFQQFAIYLEMVTVVLKELANLKIEDSERLKIAVANLNREIKVAKQLTVECGKRNKIYLLVNCQRISKDLECITKEISRVLGLIPDISFNINDKISKLRKDMLDSKYQATAVEEEILEKIETGIRERNVDKSYANNLLLCIAEAAGISTEQSVLKRELEEFKSEIEDVNLREDSAEALKMGKIVALLAKADAATSPEEKEIKYFNQRNSLGTQRLEPLHAFYCSITHDVMVDPVETSSGQTFERSAIEKWIAEGNKLCPLTATPLDMSALRPNKILRQSIEEWKDRNTMIMLASLKPALHSNDEQEVLQSLGKLHDLCIERELHREWVMMEEYCPILIGLLGAKNREIRKLSLVILCILAKDSNENKERIARVNNAIESIVRSLARQIGESKLALQLLLELSRSNLVRDFIGNVQGCIFLLVTISSGDDTQAAIDAKELLENLSFLDQNVIQMARANYFKPLLRLLSSGPVNAKMTVAATLSEIELTDNNKLSLFEDGALQPLLVLLSHSDMEMKKVAVKALYNLSSVPQNGLRMIREGAAGPLFELLYRHSLSSPSLRGEVAVIIMHLAISTTTLEADQMHVSLLESEEDIFKLFSLISLTGPDIQQIILRTFHAMCQSHSGLDIRTKLRQLSSVRVLVQLCEFDNHTVRANAVKLFCCLTEDGEDSTFVEHVSQRYIETLIRIIKTSDNVEEIAGAMSIISNLPKEAHITQWLLDAGALQIIFTCLTDGNSSASYKRQLIENAVGALCRFTVSTNQNWQKEVAKCGFFPILLQFLDSGTALTKRNAAVSLKQFSESSNGLSQPVKKHGAFWCCLASRETGCRVHLGICTVESSFCLLEANAVEPLVRVLVEPDVGACEASLDALLTLIDGERLQNGSKVLSEVNAIVPIIRLLSSSCTKLQEKALKALERIFRLIDFKQKYGNLAQMPLVDITQRGHGGMKSLAAKVLAHLDVLHEQSSYF* 1004
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 21583559 21588492 + Vvi16g1001 Vvi16g1001 778650

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1001 1003 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 9 1003 - -
Vvi16g1001 1003 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 44-LIKE 9 1003 - -
Vvi16g1001 1003 SMART Ubox_2 260 323 IPR003613 GO:0004842|GO:0016567
Vvi16g1001 1003 SUPERFAMILY ARM repeat 334 613 IPR016024 -
Vvi16g1001 1003 SMART arm_5 748 794 IPR000225 GO:0005515
Vvi16g1001 1003 SMART arm_5 871 911 IPR000225 GO:0005515
Vvi16g1001 1003 SMART arm_5 915 955 IPR000225 GO:0005515
Vvi16g1001 1003 SMART arm_5 797 837 IPR000225 GO:0005515
Vvi16g1001 1003 SMART arm_5 527 567 IPR000225 GO:0005515
Vvi16g1001 1003 Gene3D - 431 857 IPR011989 -
Vvi16g1001 1003 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 238 328 IPR013083 -
Vvi16g1001 1003 SUPERFAMILY RING/U-box 247 329 - -
Vvi16g1001 1003 Gene3D - 859 992 IPR011989 -
Vvi16g1001 1003 Coils Coil 67 87 - -
Vvi16g1001 1003 CDD RING-Ubox_PUB 261 301 IPR045210 -
Vvi16g1001 1003 SUPERFAMILY ARM repeat 634 957 IPR016024 -
Vvi16g1001 1003 ProSiteProfiles U-box domain profile. 256 330 IPR003613 GO:0004842|GO:0016567
Vvi16g1001 1003 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 538 580 IPR000225 GO:0005515
Vvi16g1001 1003 Gene3D - 329 430 IPR011989 -
Vvi16g1001 1003 Coils Coil 191 218 - -
Vvi16g1001 1003 Pfam U-box domain 261 327 IPR003613 GO:0004842|GO:0016567
Vvi16g1001 1003 Pfam Armadillo/beta-catenin-like repeat 528 567 IPR000225 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1001 - - - vvi:100253690 1922.13
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi15g649 Vvi16g1001 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g1001 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004737 1 1 1 1 2 1 2 1 1 1 1 1 2 1 0 2 1 4 2 1 1 1 1 1 1 1 1 1 1 4 40