Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1004 ATGGCGGATCCTTATTGGAGGTACGGCGAAGTCAGGCAGCCGCCGCCGATTCCTTCTCTCTCCGCAAAACGACCTCGTTCTGATTACGATGTTCCTGGTGGCCATGATTTGCCCAGTTATTTTTCTCGTGAGGATGAAAGAGCAGCTCACCGTTCAATTAGGGATTCTGATTCCATTGGAGCATCCTATGATCGTTACCTGCGCAATGCACAGATGCCATCCTATGGTGGAGATTCTGGTCGGCCATTGAGCGGGGGAATAACTAGTCACCCTGTAGATGATCCACGTGTTGTGGGTGTTAGAGGTGTGGACCAAGGTGCAACTGTAAAAAGCCAGAGCTTAGGATTCAGTGGAGGAAGACCTGAGCTTCCCCTTCCTCCTGATGCTTCCAGTACATTGTTTGTGGAGGGCTTGCCTGCAAACTGTACCCGCAGAGAAGTATCTCATATCTTTCGCCCTTTTGTAGGCTACAAAGAAGTGAGACTTGTGAGCAAGGAATCAAGACATTCTGGAGGTGATCCATTGGTACTCTGTTTTGTTGACTTTGTGAGTCCAGCACATGCAGCCACTGCAATGGATGCTTTACAAGGTTATAAATTTGATGAGCATGACCGCGACTCGGTCAATTTAAGGCTTCAATTTGCTCGCTATCCTGGTGCGAGGTCAGGTGGCGGGCATCGTGGCAAGCGTTAA 693 49.35 MADPYWRYGEVRQPPPIPSLSAKRPRSDYDVPGGHDLPSYFSREDERAAHRSIRDSDSIGASYDRYLRNAQMPSYGGDSGRPLSGGITSHPVDDPRVVGVRGVDQGATVKSQSLGFSGGRPELPLPPDASSTLFVEGLPANCTRREVSHIFRPFVGYKEVRLVSKESRHSGGDPLVLCFVDFVSPAHAATAMDALQGYKFDEHDRDSVNLRLQFARYPGARSGGGHRGKR* 231
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 21608208 21615368 - Vvi16g1004 Vvi16g1004 778653

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1004 230 SUPERFAMILY RNA-binding domain, RBD 114 225 IPR035979 GO:0003676
Vvi16g1004 230 MobiDBLite consensus disorder prediction 73 96 - -
Vvi16g1004 230 MobiDBLite consensus disorder prediction 39 53 - -
Vvi16g1004 230 SMART rrm1_1 132 209 IPR000504 GO:0003723
Vvi16g1004 230 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 133 203 IPR000504 GO:0003723
Vvi16g1004 230 MobiDBLite consensus disorder prediction 1 53 - -
Vvi16g1004 230 PANTHER PROTEIN MATERNALLY EXPRESSED GENE 5 13 230 - -
Vvi16g1004 230 CDD RRM_RBPMS_like 131 213 - -
Vvi16g1004 230 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 13 230 - -
Vvi16g1004 230 Gene3D - 127 217 IPR012677 -
Vvi16g1004 230 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 131 217 IPR000504 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1004 - - - vri:117933624 463.381
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g1004 . . . Bda07g01945 Bpe03g00200 . . . Cmo16g00039 . . . . . . . Cpe14g00026 Bhi01g01516 Tan01g0067 . . Hepe07g0042 Mch10g0042 . . . . . . . . Cone1ag1002 Cone5ag0710 . . . . . Cme06g01167 . Blo09g00014 . . . . . . . . . Cma16g00033 . Car16g00032 . . . . . . . . . . Cla05g00986 Cam05g1077 Cec05g1085 Cco05g1079 Clacu05g1071 . . . Csa03g01967 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010365 1 3 1 1 1 1 1 1 1 0 1 1 1 1 1 1 0 2 1 0 1 1 1 1 1 1 1 0 4 1 32