Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1008 ATGTCTTGTTCTGAAAATTCAAAGCCAAATCTTGTTTCTTGGAGTGCAGTTATAGGTGGGTTCGCACAGAATGGCTACGACAAGGAAGCTCTTGAGCTGCTGTGCAGAATGCAAGCAGCAGGGTTTGAACCAAATGCCCGAACCCTAGCTAGTGTTCTTCCTGCCTGTGCCAGATTACAAAACCTAAACCTTGGCAAGGAAATCCATGGCTACGTCACGAGACACGGGTTCATGTCCAACCCTTTCGTTGTGAATGGATTGGTAGATGTGTATAGGAGGTGCGCTGATATGGGAAGCGCTCTCAAGATCTTTTCAGGGTTTTCGGTGAAAAATGTGGTTTCGTATAATACAATGATAGTAGGGTACTGTGAGAATGGTAATGTGGAAAAGGCCAAGGAGTTGTTTGATCAGATGGAGCTGGTGGGGAAGGATACAATTTCATGGAACTCGATGATTTCAGGATATGCTGACAACTTACTCAAATGTGAAGATTTGAAGGCTGCTCAGTTGGCTTTTGATGGAGTAACGGAAAGGGATACTGCTACATGGAACGTGTTGATCTCTGGCTATGCCTGCTGCAATCAGCTTGAGAACATTCAGAATCTTATTCAGAAGATGAAAGGAGATGGTTTTGAGCCAAATGTATATACCTGGAATGGAATTATTTCGGGTCATGTGGAGAACGGCCACAATGAGCTTGCTCTGAGATTATTCACTGAGATGCAGACTTCAAGTCTGAGGCCTGATATATACACAGTTGGAATAATTTTACCTGCCTGCGCAAGGTTGGCGACCATTGCACGAGGCAAGCAGGTTCATGCACATTCAATAAGACAAGGATATGAGTTGGATGTTCACATTGGAGCAGCTCTAGTGGACATGTATGCAAAATGCGGAAGCATAAAGCATGCAATGCAGGTCTATAACAGGATCTCAAACCCTAATTTGGTGTCTCAAAACGCCATGCTTACTGCATATGCAATGCATGGACATGGGGATGAAGGAATTGCCCTATTTCGTAACATGCTGGGAAATGGCTTTAGACCTGACCATGTGACTTTCCTATCAGTTCTTTCTTCATGTGTGCACGCTGGGGCAGTTGAGACTGGCCATGAGTTCTTTGATCTGATGACGTATTATAATGTGACACCAAGTTTAAAACACTACACATGTATCGTTGATCTCCTAAGTCGAGCAGGAAGGCTAGACGAAGCTTATGAGCTCGTTAAGAAAATACCAAGGAAGCCTGATTCAGTTATGTGGGGTGCCCTACTTGGGGGATGTGTTATTTGGGGTAACGTTGAGTTGGGAGAAATTGCAGCAGAAAGTCTCATAGAGTTGGAACCAAATAATACTGGAAACTATGTTCTGCTGGCAAACTTGTATGCTTATGCAGGGAGGTGGCATGACCTAGATAGAACAAGGCAGATGATTAAGGATAGGGGAATGCACAAGAGCCCAGGATGCAGTTGGATTGAAGATAGAGAAGATATTCATGTGTTTCTTTCCTGTGACAAATCTCATGAGAAAACAGAGGATATTTATACAACTCTAGATAATTTGAACACTCACATGAGAACAGGGTTAGAACACGTATATAATTGTAAGAATATAGCATGA 1620 43.15 MSCSENSKPNLVSWSAVIGGFAQNGYDKEALELLCRMQAAGFEPNARTLASVLPACARLQNLNLGKEIHGYVTRHGFMSNPFVVNGLVDVYRRCADMGSALKIFSGFSVKNVVSYNTMIVGYCENGNVEKAKELFDQMELVGKDTISWNSMISGYADNLLKCEDLKAAQLAFDGVTERDTATWNVLISGYACCNQLENIQNLIQKMKGDGFEPNVYTWNGIISGHVENGHNELALRLFTEMQTSSLRPDIYTVGIILPACARLATIARGKQVHAHSIRQGYELDVHIGAALVDMYAKCGSIKHAMQVYNRISNPNLVSQNAMLTAYAMHGHGDEGIALFRNMLGNGFRPDHVTFLSVLSSCVHAGAVETGHEFFDLMTYYNVTPSLKHYTCIVDLLSRAGRLDEAYELVKKIPRKPDSVMWGALLGGCVIWGNVELGEIAAESLIELEPNNTGNYVLLANLYAYAGRWHDLDRTRQMIKDRGMHKSPGCSWIEDREDIHVFLSCDKSHEKTEDIYTTLDNLNTHMRTGLEHVYNCKNIA* 540
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 21629330 21631151 - Vvi16g1008 Vvi16g1008 778657

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1008 539 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 179 213 IPR002885 -
Vvi16g1008 539 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 183 320 - -
Vvi16g1008 539 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 319 522 - -
Vvi16g1008 539 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 5 163 - -
Vvi16g1008 539 Pfam PPR repeat family 213 262 IPR002885 -
Vvi16g1008 539 Pfam PPR repeat family 314 362 IPR002885 -
Vvi16g1008 539 Pfam PPR repeat family 9 58 IPR002885 -
Vvi16g1008 539 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 10 44 IPR002885 -
Vvi16g1008 539 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 214 248 IPR002885 -
Vvi16g1008 539 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 315 349 IPR002885 -
Vvi16g1008 539 Gene3D Tetratricopeptide repeat domain 158 276 IPR011990 GO:0005515
Vvi16g1008 539 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 111 145 IPR002885 -
Vvi16g1008 539 TIGRFAM PPR: pentatricopeptide repeat domain 216 250 IPR002885 -
Vvi16g1008 539 TIGRFAM PPR: pentatricopeptide repeat domain 12 46 IPR002885 -
Vvi16g1008 539 TIGRFAM PPR: pentatricopeptide repeat domain 113 139 IPR002885 -
Vvi16g1008 539 TIGRFAM PPR: pentatricopeptide repeat domain 182 215 IPR002885 -
Vvi16g1008 539 TIGRFAM PPR: pentatricopeptide repeat domain 317 350 IPR002885 -
Vvi16g1008 539 Pfam PPR repeat 182 211 IPR002885 -
Vvi16g1008 539 Pfam PPR repeat 388 414 IPR002885 -
Vvi16g1008 539 Pfam PPR repeat 290 311 IPR002885 -
Vvi16g1008 539 Pfam PPR repeat 146 158 IPR002885 -
Vvi16g1008 539 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 183 320 - -
Vvi16g1008 539 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 319 522 - -
Vvi16g1008 539 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 5 163 - -
Vvi16g1008 539 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 350 384 IPR002885 -
Vvi16g1008 539 Pfam PPR repeat 111 139 IPR002885 -
Vvi16g1008 539 Pfam E motif 432 493 IPR046848 -
Vvi16g1008 539 Gene3D Tetratricopeptide repeat domain 292 527 IPR011990 GO:0005515
Vvi16g1008 539 Gene3D Tetratricopeptide repeat domain 55 157 IPR011990 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1008 - - - vvi:100260559 1003.82
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g1008 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .