Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1009 ATGGACACAGCTCAGTGGCCACAGGGGATTGGAGTGGTTAAACCCATGGAAAGCTCAGGGCCTGTGGCTGAGAGGAGGGCAAGGCCACAGAAGGATCAAGCTTTGAACTGCCCAAGGTGCAATTCAACCAATACAAAGTTCTGTTACTATAACAACTACAGTCTCTCACAGCCTAGATACTTCTGCAAAACTTGTAGAAGGTATTGGACAGAGGGTGGTTCTCTCAGAAATGTTCCAGTTGGTGGCGGTTCAAGGAAGAACAAGAGGTCAACTTCTTCTTCTTCTTCATCATCATCACCAGCTTCTTCAAAAAAATTGCTTCCTGATCATCTTATCACTAGGTTTCCATCATCTGCTTCTCAAAACCCTAAGATCCATGAAGGCCAAGATCTCAACCTAGCTTTCCCACCTCCTCCTGAGGATTACAACAACAGCATATCTGAATTTGCTGATTTGGGACTGGGTTCTTTCATGCCCATGTCGGTTTCTGATTCAAATTCAATTTACTCATCTGGGTTTCCTCTGCAGGAGTTCAAACCAACTCTTAATTTTTCTCTGGATGGGTTTCAAAGTGGGTATGGGAGTCTGCAAGGAGTTCAGGAGAGTGGTGCAAGGCTGTTGTTCCCACTTGAGGATTTGAAGCAAGTTTCAAACACCACTGAGTTTGAGCAAAGTAGAGGAGTTCAAGGAGACTCAGCTGGGTATTGGAATGGAATGTTGGGTGGAGGATCATGGTAA 738 44.99 MDTAQWPQGIGVVKPMESSGPVAERRARPQKDQALNCPRCNSTNTKFCYYNNYSLSQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSTSSSSSSSSPASSKKLLPDHLITRFPSSASQNPKIHEGQDLNLAFPPPPEDYNNSISEFADLGLGSFMPMSVSDSNSIYSSGFPLQEFKPTLNFSLDGFQSGYGSLQGVQESGARLLFPLEDLKQVSNTTEFEQSRGVQGDSAGYWNGMLGGGSW* 246
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 21635864 21637951 - Vvi16g1009 Vvi16g1009 778658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1009 245 PANTHER DOF ZINC FINGER PROTEIN DOF4.6-LIKE 155 242 - -
Vvi16g1009 245 PANTHER DOF ZINC FINGER PROTEIN DOF4.6-LIKE 1 99 - -
Vvi16g1009 245 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 155 242 IPR045174 GO:0003700|GO:0006355
Vvi16g1009 245 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 1 99 IPR045174 GO:0003700|GO:0006355
Vvi16g1009 245 ProSitePatterns Zinc finger Dof-type signature. 37 73 IPR003851 GO:0003677|GO:0006355
Vvi16g1009 245 ProSiteProfiles Zinc finger Dof-type profile. 35 89 IPR003851 GO:0003677|GO:0006355
Vvi16g1009 245 Pfam Dof domain, zinc finger 32 89 IPR003851 GO:0003677|GO:0006355
Vvi16g1009 245 MobiDBLite consensus disorder prediction 1 32 - -
Vvi16g1009 245 MobiDBLite consensus disorder prediction 76 105 - -
Vvi16g1009 245 MobiDBLite consensus disorder prediction 84 104 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi15g660 Vvi16g1009 ECH
Vvi2g209 Vvi16g1009 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14105 PF02701 zf-Dof 8.80E-34 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1009 - - vvi:100264143 468.388