Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1010 ATGGATCCCGAAATTCACTTGGTCGCCTCGATCGACTCGCCCGAGTTCACTCTCCTGACTCAGTCCCTAACTCAATCCTCACTCATCGGACTCGACGCCGAGTGGAAGCCCATTCGCACCCAGCAGTCCTCTTTTCCCACCGTGTCCCTCCTCCAACTCGCGTGCCAACTCGGTCCTCGACTCGGTCCCGACTCGGCTAAGTCCCTGGTTTTTCTACTCGACCTCTCGGCGATTTCTCTTTCCTCGATCTACGAGCTGCTGAGAGACGTGTTCGTTTCACCCGATGTTTTGAAATTAGGGTTTCGGTTTAAGCAGGATTTGATTTATTTGTCTTCCACCTTTTGCTCTCAAGGTTGTGATCCCGGATTTGATAGGGTGGAACCCTTTTTAGATATCACAAGCATATACAATTATCTGCAACATAAGAGCCTGGGAAGAAGGATACCAAAGGAAACCAAGAGCTTGGCTTCTATCTGCAAAGAGTTGTTGGGCATTTCTCTCTCAAAGGAACTTCAATGTAGTGATTGGTCACACCGTCCACTTACAGAAGAGCAGAAAACATATGCAGCTACAGATGCACACTGCTTGCTTGAAATATTCAACATCTTCCACTTCAAAGTTGCTGAAAAAGGATATGTGGGTTCATGTAATCTTAGACGATCCTCCAAAGGAAATTCTTTTTGTAGTGCCACTGAACAGCGTTTCTCAAATGTGGATTGCGGGTTGAAACAGATTCTTGAGAATCCTGATATTTGTCATAAACTTCTGAGGAGCAAGTTTTTTGATGCTGTAGATATAGTTCGAGCTACTACATCTGAATTTCCTCAGAGAAAAGCTACTTTAGAGGAAGTTGTTTCATGGTCATCATGCAGAAATACCATCCCTATGGATGATTCCCTCTTTAGCATTGTTAGGAAATATGGTGAAAGAATTTTGTTGAAGGAATCTGACAGAAAGCCTAAAACCAAGAAGAAAGGGAAAAAACAATCTTCAGCAGTTTGCAAAGAGAAGCAAATAGAAATTTTTGATGAGTGGTGTAGCCCCCCACCATGGGATTTGACCTTGGGGGGAGATGGATGCCCTAAGTTTCTATGTGATGTGATGGTGGAAGGCTTAGCAAAGCATTTACGATGTGTTGGGATAGATGCTGCAATACCATATTCAAAAAAACCTGAATCTAGGGAGTTAATTGATCAAGCACGGAAAGAGAATAGGGTGCTCTTGACGCGAGATTCCAAGCTACTGAGACATGAGTATTTGATAAAAAATCAAATATATAGGGTGAAGAATCTTCTCAAAAATGAACAGCTACTTGAGGTAATCGAAACATTCCAATTGAAAATTTGCGAGGATCAGCTAATGTCAAGGTGCACCAAATGCAATGGGAGGTTTATCCAAAAGCCGCTAACAGCAGAAGAGGCTAGTGAAGCTGCAAAAGGTTTCCAAGTAATTCCCAACTGCTTGTTTGACTCAAATCTAGAATTTTGGCAGTGCATGGACTGCAACCAACTTTACTGGGAGGGAACCCAATATCACAACGCAGTTCAGAAGTTCATCAACGTCTGCAAGTTGAATGAGTAG 1581 43.07 MDPEIHLVASIDSPEFTLLTQSLTQSSLIGLDAEWKPIRTQQSSFPTVSLLQLACQLGPRLGPDSAKSLVFLLDLSAISLSSIYELLRDVFVSPDVLKLGFRFKQDLIYLSSTFCSQGCDPGFDRVEPFLDITSIYNYLQHKSLGRRIPKETKSLASICKELLGISLSKELQCSDWSHRPLTEEQKTYAATDAHCLLEIFNIFHFKVAEKGYVGSCNLRRSSKGNSFCSATEQRFSNVDCGLKQILENPDICHKLLRSKFFDAVDIVRATTSEFPQRKATLEEVVSWSSCRNTIPMDDSLFSIVRKYGERILLKESDRKPKTKKKGKKQSSAVCKEKQIEIFDEWCSPPPWDLTLGGDGCPKFLCDVMVEGLAKHLRCVGIDAAIPYSKKPESRELIDQARKENRVLLTRDSKLLRHEYLIKNQIYRVKNLLKNEQLLEVIETFQLKICEDQLMSRCTKCNGRFIQKPLTAEEASEAAKGFQVIPNCLFDSNLEFWQCMDCNQLYWEGTQYHNAVQKFINVCKLNE* 527
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 21644191 21676537 - Vvi16g1010 Vvi16g1010 778659

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1010 526 SMART 35exoneu6 5 208 IPR002562 GO:0003676|GO:0006139|GO:0008408
Vvi16g1010 526 Pfam Mut7-C RNAse domain 361 517 IPR002782 -
Vvi16g1010 526 SUPERFAMILY Ribonuclease H-like 5 213 IPR012337 -
Vvi16g1010 526 Pfam 3'-5' exonuclease 15 204 IPR002562 GO:0003676|GO:0006139|GO:0008408
Vvi16g1010 526 CDD mut-7_like_exo 5 204 IPR037432 GO:0008408
Vvi16g1010 526 PANTHER 3'-5' EXONUCLEASE DOMAIN-CONTAINING PROTEIN 4 523 - -
Vvi16g1010 526 Gene3D - 3 210 IPR036397 GO:0003676
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1010 K09122 K09122; uncharacterized protein - vvi:100255486 1006.9
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g1010 . . . Bda07g01943 Bpe03g00198 . . Bma14g02016 Cmo16g00041 . . . . . . . Cpe14g00028 Bhi01g01513 . . . . . . . . . . . . . Cone1ag1000 . . . . . . Cme06g01165 . Blo09g00016 . . . . . . . . . Cma16g00035 . Car16g00035 . . . . . . . . . . Cla05g00984 Cam05g1075 Cec05g1082 Cco05g1075 Clacu05g1069 Cmu05g1020 Cre05g1094 . Csa03g01969 Chy06g01179 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009012 1 2 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 33