Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1011 ATGGCGCCAAATTCCCTTTCCCGCGAACCAAAAAAAAAAGCGCGCGAAACTCTTTCGTTGGCTCTTACACTCAAATACCGACCGCCCACTCTCCACACCCAATCTCACACCTCTCTCTCTTTCTCTCTCCCTACAGCAATGGCTTCTTCACAAACCAGAACCCTTCGTAGACGCCGAACCCAAGCTTCAAAACCCATATCTCAATCTCCTCTAAAGTCCCTCTCAAAGTCCCAGATCGACGACTACTACAGCGATGCCGTCTGCGAAGAATGCGGCTCTGGTGACGCCGCCGACGAGCTGCTCCTGTGTGACAAGTGCGATCGGGGGTTTCATCTATTTTGCCTTAGACCCATCATCGTTTCTGTGCCCAAAGGGCCATGGTTCTGCCCTTCGTGCTCCAGTCAGAAGAAGCTCAAGTATTTTCCTCTGGTCCAAACCAAAATTGTTGATTTCTTTCGGATTCAGAGGTCTACAGAATCAACACAAAAGCTTAATTATGATAGCCAAAAGAGACGTAAAAGAAGCAGCAGCTTAGTCGTGTCAAAGAAGAAGAGGAAGCTGCTGCCCTTCAATCCAACCGAAGACCCTTTGAGGAGAATGGAACAAATGGCATCACTGGCAACAGCATTAACAGCTACCAGGACAGAGTTCAGCAATGAGCTCACTTACATCCCTGGTATGGCTCCTAAGTCTGCAAATCGAGCAGTTCTTGAGCATGGAGGAATGCAGGTTTTATCTAAAGAAGACACTGAAACCTTAAATTTATGCAAAAGCATGATGGGAAGAGGAGAATGGCCACCTCTTATGGTTGTTTTTGATCCTAAAGAAGGGTTCACAGTTGAGGCAGATAGGTTCATAAAAGATCTAACAATAATAACAGAGTATGTTGGAGATGTTGATTACTTGAAGAACAGAGAAAACGATGAAGGGGATAGCATGATGACCCTCATTTCTGCTAATGAGCCTTTAAGAAGCCTTGTCATCTGTCCTGACAAGCGTGGTAACATTGCCCGTTTCATCAATGGAATCAACAATCACATGCCGGATGGTAAGAAGAAGCAGAATGTCAAGTGTGTGAGGTTTGAAGTCAACGGCGAGTGTCGGGTTTTACTGATAGCAAGCAGAGACATACCAAAGGGAGAAAGATTGTATTATGACTACAATGGATATGAGAATGAATACCCAACTCAACACTTTGTCTAA 1203 45.14 MAPNSLSREPKKKARETLSLALTLKYRPPTLHTQSHTSLSFSLPTAMASSQTRTLRRRRTQASKPISQSPLKSLSKSQIDDYYSDAVCEECGSGDAADELLLCDKCDRGFHLFCLRPIIVSVPKGPWFCPSCSSQKKLKYFPLVQTKIVDFFRIQRSTESTQKLNYDSQKRRKRSSSLVVSKKKRKLLPFNPTEDPLRRMEQMASLATALTATRTEFSNELTYIPGMAPKSANRAVLEHGGMQVLSKEDTETLNLCKSMMGRGEWPPLMVVFDPKEGFTVEADRFIKDLTIITEYVGDVDYLKNRENDEGDSMMTLISANEPLRSLVICPDKRGNIARFINGINNHMPDGKKKQNVKCVRFEVNGECRVLLIASRDIPKGERLYYDYNGYENEYPTQHFV* 401
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 21677419 21681935 + Vvi16g1011 Vvi16g1011 778660

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1011 400 CDD PHD_BAZ2A_like 88 132 - -
Vvi16g1011 400 MobiDBLite consensus disorder prediction 50 72 - -
Vvi16g1011 400 Pfam SET domain 300 388 IPR001214 GO:0005515
Vvi16g1011 400 PANTHER HISTONE ACETYLTRANSFERASE 54 397 - -
Vvi16g1011 400 ProSiteProfiles Zinc finger PHD-type profile. 85 135 IPR019787 -
Vvi16g1011 400 SUPERFAMILY SET domain 259 388 IPR046341 -
Vvi16g1011 400 CDD SET_ATXR5_6-like 263 400 - -
Vvi16g1011 400 Pfam PHD-finger 88 134 IPR019787 -
Vvi16g1011 400 ProSitePatterns Zinc finger PHD-type signature. 88 132 IPR019786 -
Vvi16g1011 400 SMART PHD_3 87 133 IPR001965 -
Vvi16g1011 400 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 33 141 IPR013083 -
Vvi16g1011 400 Gene3D SET domain 172 400 IPR046341 -
Vvi16g1011 400 ProSiteProfiles SET domain profile. 266 388 IPR001214 GO:0005515
Vvi16g1011 400 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATXR6 54 397 - -
Vvi16g1011 400 SUPERFAMILY FYVE/PHD zinc finger 81 141 IPR011011 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1011 K24406 ATXR5_6; [histone H3]-lysine27 N-methyltransferase [EC:2.1.1.369] - vvi:100250306 674.085
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g1011 Blo06g01057 . . . . . . . . . . Cma15g01016 Car02g00937 Car15g00951 . Cpe05g00589 . . . . . . . . Cla01g00030 Cam01g0029 Cec01g0027 Cco01g0029 Clacu01g0029 Cmu01g0028 Cre09g2478 . . . . . . . . . . . Bda15g00790 . Bpe12g00344 Bma08g00393 . . Cmo02g01162 Cmo15g01080 . . . . . Cpe13g00321 Bhi12g00670 . . . Hepe06g0809 . . . . . . . . . Lsi09g00010 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001827 2 3 2 2 2 2 5 2 2 2 2 2 3 2 2 4 2 2 4 2 2 2 2 1 1 2 2 4 1 2 68
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14107 PF00856 SET 2.60E-06 No_clan Vvi TR