Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1012 ATGATGAGTAGCTTAAGTGAAAATGAGGATGAGCAATACCAATATTTCGATGCCCATGATGATATGGATGCTGCATCGCTGTCAGATTCCACTTTTCAATATGATGTATGGGCTGGGAGCCCAGGAAGCGTGAAAGAGCGTCGTAACAAGTTCTTGAATTGGATGGGGTTGAGCTTAGATAGGTTTTCATGCGATAATTCTGTAGATGTATGTAGTGATTCATTGGGAGGAGGGGTTGATAGGGTTAGAGAGAGTAGTGGGGCGGTGTTGAGAACCTTGGGTTTTGAGGATGAGTTTTGTTCTAGTCGGTCCTCCATTGAGGTGAGTGAATTTCGAGAAGTGGGTTTGGACCGATTGGTGACAATTAATGAATGTCAAAACATTTCTGATTCATTGTTGTCTTCCTCGGTCCAGCAAGTCATTCAAAGGGAAATTGAAGAGGCAAGCAATCCAGTGGGTGCAGCAAAGAGAGTCAAGAAGGGCTGGTTGAGTAGATTGCGTTCCATGTCTTGCATCATGGATAGGCATGGAGAAATTCATAACTTGACGACTAATGACACCAATCCAATTCCGGGGGCCAGGATACAGAGAGTCAGGGTTCGTCAATGCAGGAAGCAGATGAAGGAACTTTCGGCTCTATATAAGGGACAAGATATTCAGGCCCATGAGGGTTCAATCTTGTCAATGAAATTCAGCCCGGATGGGAAGTACCTCGCCAGCGCAGGTGAAGATGGGATTGTTCGGATATGGCAAGTGGTGGAGGATGAGAGATCAAATGATCATGACATTCCGGAAATAGACCCAATGTGCATATACTTCACAGTGAATCATCTTTCTGAATTGACACCCCTCTTTGCCGAAAAAGAGAAACTGAGCAAATTGAGGAGCCTGAGGAAAACATCAGACTCAGCTTGTGTCATTTTCCCACCAAAAGTCTTCAGGATATTGGAGAAACCATTGCATGAGTTCCATGGGCACAGCAGCGAGATCTTGGACCTCTCATGGTCAAATAACAATTATCTACTTTCTTCATCAATTGATAAAACTGTCCGTCTGTGGCGAGTGGGATGCGACCATTGCCTCAAAATTTTTTCACATAATAATTATGTGACATGCGTTCAGTTTAACCCTGTGGATGATAATTACTTCATCAGTGGATCAATAGATGGAAAAGTTCGGATTTGGGCAATTCCTGGTTGCCAAGTTGTTGATTGGACTGATATAAGAGAAATGGTCACTGCAGTGTGCTATCGCCCTGACGGGCAGGGAGGGATTGTTGGCTCTATGACAGGCACTTGCCGCTTTTACAATGTATCAGATAATCACTTGCAACTGGAATCTCAGATGTGCTTACATGGTAAAAAGAAATCACTCTGCAAGAGGATTACCGGCTTCCAGTTCTCTCCACAAGACCCTAGCACGGTAATGGTTACATGTGCAGATTCACAAGTCAGAATTCTCCATGGGACCAATGTGATTGGGAAATACAAGGGCCTCCGTAATGCAGGAAACCAGATGTCTGCATCTTTCACCTCAGACGGAAAGCATATAGTTTCAGCATGTGATGATTCCAACGTCTATGTATGGAACTGCAGTAATGAAGGAGAGCCTGCTCTCTCCCAATCAAAAAGCATTAGGGCGTTTGAGCACTTCCTGACCAATGCATCAGTTGCAATACCATGGTGTGGTATGAAATATGGGAACCCTGAAAATGGATGGCAATTTCATGCTCTGGATGAGAGTTCACCCAACACTCTGCCTTTTCCTTCACCTGCTTCATTTTCCCTGAGCCAAGAATTCTTCTCAGAATCTTTTCCCAAGGGATCCGCAACATGGCCAGAGGAAAAACTTCCTACTTCAAGCCTGGTGTCTGTTCCATCTAAAATCCATAAATCTGAACATAAATTTTTGAAAGCTTGCCAGAGCACATCCAGTTCTCATGCATGGGGTCTTGTCATTGTGACTGCAGGCTGGGATGGACGAATCAGGTCATTCCACAATTATGGGTTACCGGCACCTCTCTAA 2025 44.4 MMSSLSENEDEQYQYFDAHDDMDAASLSDSTFQYDVWAGSPGSVKERRNKFLNWMGLSLDRFSCDNSVDVCSDSLGGGVDRVRESSGAVLRTLGFEDEFCSSRSSIEVSEFREVGLDRLVTINECQNISDSLLSSSVQQVIQREIEEASNPVGAAKRVKKGWLSRLRSMSCIMDRHGEIHNLTTNDTNPIPGARIQRVRVRQCRKQMKELSALYKGQDIQAHEGSILSMKFSPDGKYLASAGEDGIVRIWQVVEDERSNDHDIPEIDPMCIYFTVNHLSELTPLFAEKEKLSKLRSLRKTSDSACVIFPPKVFRILEKPLHEFHGHSSEILDLSWSNNNYLLSSSIDKTVRLWRVGCDHCLKIFSHNNYVTCVQFNPVDDNYFISGSIDGKVRIWAIPGCQVVDWTDIREMVTAVCYRPDGQGGIVGSMTGTCRFYNVSDNHLQLESQMCLHGKKKSLCKRITGFQFSPQDPSTVMVTCADSQVRILHGTNVIGKYKGLRNAGNQMSASFTSDGKHIVSACDDSNVYVWNCSNEGEPALSQSKSIRAFEHFLTNASVAIPWCGMKYGNPENGWQFHALDESSPNTLPFPSPASFSLSQEFFSESFPKGSATWPEEKLPTSSLVSVPSKIHKSEHKFLKACQSTSSSHAWGLVIVTAGWDGRIRSFHNYGLPAPL* 675
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 21690986 21696151 + Vvi16g1012 Vvi16g1012 778661

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1012 674 Pfam WD domain, G-beta repeat 220 250 IPR001680 GO:0005515
Vvi16g1012 674 Pfam WD domain, G-beta repeat 508 530 IPR001680 GO:0005515
Vvi16g1012 674 Pfam WD domain, G-beta repeat 318 353 IPR001680 GO:0005515
Vvi16g1012 674 Pfam WD domain, G-beta repeat 360 395 IPR001680 GO:0005515
Vvi16g1012 674 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 219 252 - -
Vvi16g1012 674 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 323 355 - -
Vvi16g1012 674 SMART WD40_4 357 396 IPR001680 GO:0005515
Vvi16g1012 674 SMART WD40_4 489 530 IPR001680 GO:0005515
Vvi16g1012 674 SMART WD40_4 398 437 IPR001680 GO:0005515
Vvi16g1012 674 SMART WD40_4 212 251 IPR001680 GO:0005515
Vvi16g1012 674 SMART WD40_4 316 354 IPR001680 GO:0005515
Vvi16g1012 674 SMART WD40_4 630 666 IPR001680 GO:0005515
Vvi16g1012 674 SMART WD40_4 444 488 IPR001680 GO:0005515
Vvi16g1012 674 ProSiteProfiles Trp-Asp (WD) repeats profile. 323 355 IPR001680 GO:0005515
Vvi16g1012 674 ProSiteProfiles Trp-Asp (WD) repeats profile. 363 395 IPR001680 GO:0005515
Vvi16g1012 674 ProSiteProfiles Trp-Asp (WD) repeats profile. 219 260 IPR001680 GO:0005515
Vvi16g1012 674 ProSiteProfiles Trp-Asp (WD) repeats profile. 507 530 IPR001680 GO:0005515
Vvi16g1012 674 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 363 395 - -
Vvi16g1012 674 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 2 108 - -
Vvi16g1012 674 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 107 673 - -
Vvi16g1012 674 SUPERFAMILY WD40 repeat-like 219 664 IPR036322 GO:0005515
Vvi16g1012 674 Gene3D - 206 551 IPR015943 GO:0005515
Vvi16g1012 674 PRINTS G protein beta WD-40 repeat signature 238 252 IPR020472 -
Vvi16g1012 674 PRINTS G protein beta WD-40 repeat signature 341 355 IPR020472 -
Vvi16g1012 674 PRINTS G protein beta WD-40 repeat signature 383 397 IPR020472 -
Vvi16g1012 674 PANTHER WD REPEAT DOMAIN 44 107 673 IPR040324 -
Vvi16g1012 674 PANTHER WD REPEAT DOMAIN 44 2 108 IPR040324 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1012 - - - vvi:100245187 1301.58
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi2g208 Vvi16g1012 ECH
Vvi15g661 Vvi16g1012 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g1012 . Blo15g00080 Bda05g00130 Bda07g01942 Bpe03g00197 Bpe07g01024 Bma10g01307 Bma14g02015 . . Cma02g01133 Cma15g01017 Car02g00936 Car15g00952 . Cpe05g00590 . . . . . . . . Cla01g00031 . Cec01g0028 Cco01g0030 Clacu01g0030 Cmu01g0029 Cre09g2477 Cone1ag0999 Cone5ag0704 . . . . . . Blo07g00327 Blo09g00017 Bda06g00793 Bda15g00789 . Bpe12g00345 Bma08g00392 Bma12g01219 . Cmo02g01161 Cmo15g01081 . . . . . Cpe13g00320 Bhi12g00667 . . . Hepe06g0808 . . . . . . . . . Lsi09g00011 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003050 4 4 3 4 3 0 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 4 1 52