Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1017 ATGTACGGTGCGTGGGGTCTACGCGCTTCCTCTGTCGTCCTCGGCATCCTTCTCGTCGGATGTTTGGTTGCGATCTCTATCGCAAAAGAGGAATCCAACAAATTGGGAACAGTTATTGGTATTGATCTTGGAACAACTTACTCTTGTGTTGGTGTTTACAAGAATGGACATGTTGAGATCATAGCTAACGACCAAGGTAACCGTATCACCCCATCATGGGTTGCCTTCACTGACACTGAAAGGTTGATTGGTGAGGCTGCAAAGAATCAGGCGGCTGTCAATGCCGAGAGGACTGTATTTGATGTCAAGAGACTCATTGGAAGAAAATTTGATGATAAAGAGGTTCAAAAGGACATGAAGCTTTTCCCATTCAAGATCGTGAACAAGGATGGAAAGCCATATATACAAGTCAAGATTAAGGATGGGGAGACCAAGGTCTTCAGTCCTGAGGAGATAAGTGCTATGATTCTAACAAAGATGAAGGAGACAGCGGAAGCTTTCCTTGGAAAGACAATCAAGGATGCAGTTGTTACAGTTCCTGCTTACTTCAATGATGCCCAGAGGCAGGCCACCAAGGATGCAGGGATTATTGCTGGACTGAATGTTGCAAGAATCATCAATGAACCTACAGCAGCAGCCATTGCGTATGGTTTGGACAAAAAGGGTGGTGAAAAGAACATCCTTGTGTTTGATCTTGGTGGTGGTACATTTGATGTCAGTATCTTGACAATCGACAATGGTGTTTTTGAGGTTCTTGCCACTAATGGAGACACTCATCTGGGAGGTGAGGATTTTGATCAGAGAATCATGGAATACTTCATCAAATTGATCAAGAAGAAGCATGGAAAGGACATCAGCAAGGACAACAGAGCTATTGGGAAGTTGAGGAGAGAAAGTGAGCGTGCCAAGAGGGCCTTGAGTAGCCAGCATCAGGTCCGTGTGGAGATTGAATCTCTCTATGATGGTTTGGATTTCTCAGAACCACTTACCAGAGCTCGATTCGAAGAGTTGAACAATGACCTATTCAGAAAGACCATGGGACCTGTTAAGAAGGCCATGGAGGATGCAGGGTTGGAGAAGCGTCAGATTGATGAAATCGTTCTTGTTGGTGGAAGCACCAGGATTCCTAAAGTTCAACAGCTTCTAAAGGAGTATTTTGATGGAAAAGAACCCAACAAGGGTGTGAACCCGGATGAAGCCGTTGCTTATGGTGCTGCTGTACAAGGAAGCATCTTGAGTGGAGAGGGTGGTGATGAAACCAAAGATATCCTTCTCTTGGATGTGGCTCCACTCACTCTTGGTATTGAAACGGTTGGCGGGGTGATGACCAAATTGATTCCCAGAAACACCGTTATCCCAACCAAGAAATCTCAAGTTTTCACTACCTATCAGGATCAGCAGACAACGGTGTCCATTCAGGTCTTTGAAGGTGAAAGGAGTCTCACAAAGGACTGCAGGGAGCTTGGAAAGTTTGATTTATCAGGAATTGCCCCAGCACCAAGAGGGACCCCTCAAATTGAAGTCACGTTTGAGGTTGATGCCAATGGCATTCTAAATGTAAAGGCTGAAGACAAAGCTTCAGGGAAATCTGAGAAAATCACAATCACCAATGACAAGGAGGAAGACAAGAAGATCAAGGAGAAGATTGATGCCAGAAACAGCTTGGAGAGCTATGTCTACAACATGAAGACCCAGATCAATGACAAGGACAAACTGGCAGACAAATTAGAATCGGAGGAGAAGGAGAAGATTGAGACAGCAGTGAAAGAGGCCCTCGAGTGGCTGGACGACAACCAGAATGCAGAGACAGAGGACTACCAGGAGAAGCTGAAAGAGGTGGAAGCAGTGTGTAACCCCATCATCACTGCTGTTTATCAGAGGTCTGGTGGTGCCCCTGGTGGGAGTTCAGATGCAGGGGAAGATGAAGACTCCCATGATGAGCTGTAG 1947 45.66 MYGAWGLRASSVVLGILLVGCLVAISIAKEESNKLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDTERLIGEAAKNQAAVNAERTVFDVKRLIGRKFDDKEVQKDMKLFPFKIVNKDGKPYIQVKIKDGETKVFSPEEISAMILTKMKETAEAFLGKTIKDAVVTVPAYFNDAQRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLATNGDTHLGGEDFDQRIMEYFIKLIKKKHGKDISKDNRAIGKLRRESERAKRALSSQHQVRVEIESLYDGLDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKRQIDEIVLVGGSTRIPKVQQLLKEYFDGKEPNKGVNPDEAVAYGAAVQGSILSGEGGDETKDILLLDVAPLTLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRELGKFDLSGIAPAPRGTPQIEVTFEVDANGILNVKAEDKASGKSEKITITNDKEEDKKIKEKIDARNSLESYVYNMKTQINDKDKLADKLESEEKEKIETAVKEALEWLDDNQNAETEDYQEKLKEVEAVCNPIITAVYQRSGGAPGGSSDAGEDEDSHDEL* 649
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 21738677 21742840 - Vvi16g1017 Vvi16g1017 778666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1017 648 PANTHER HEAT SHOCK PROTEIN 70KDA 23 634 IPR013126 GO:0005524|GO:0140662
Vvi16g1017 648 Coils Coil 584 604 - -
Vvi16g1017 648 Pfam Hsp70 protein 38 626 IPR013126 GO:0005524|GO:0140662
Vvi16g1017 648 Gene3D - 540 637 IPR029048 -
Vvi16g1017 648 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 419 556 IPR029047 -
Vvi16g1017 648 SUPERFAMILY Actin-like ATPase domain 223 414 IPR043129 -
Vvi16g1017 648 SUPERFAMILY Actin-like ATPase domain 36 220 IPR043129 -
Vvi16g1017 648 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 412 539 IPR029047 -
Vvi16g1017 648 ProSitePatterns Heat shock hsp70 proteins family signature 3. 366 380 IPR018181 -
Vvi16g1017 648 Coils Coil 562 582 - -
Vvi16g1017 648 PANTHER LUMINAL-BINDING PROTEIN 23 634 - -
Vvi16g1017 648 ProSitePatterns Heat shock hsp70 proteins family signature 2. 229 242 IPR018181 -
Vvi16g1017 648 Gene3D Actin; Chain A, domain 4 261 344 - -
Vvi16g1017 648 PRINTS 70kDa heat shock protein signature 37 50 - -
Vvi16g1017 648 PRINTS 70kDa heat shock protein signature 65 77 - -
Vvi16g1017 648 PRINTS 70kDa heat shock protein signature 87 95 - -
Vvi16g1017 648 PRINTS 70kDa heat shock protein signature 175 195 - -
Vvi16g1017 648 PRINTS 70kDa heat shock protein signature 235 245 - -
Vvi16g1017 648 PRINTS 70kDa heat shock protein signature 363 379 - -
Vvi16g1017 648 PRINTS 70kDa heat shock protein signature 395 415 - -
Vvi16g1017 648 PRINTS 70kDa heat shock protein signature 422 441 - -
Vvi16g1017 648 PRINTS 70kDa heat shock protein signature 503 519 - -
Vvi16g1017 648 ProSitePatterns Heat shock hsp70 proteins family signature 1. 41 48 IPR018181 -
Vvi16g1017 648 Gene3D - 221 395 - -
Vvi16g1017 648 Gene3D - 39 410 - -
Vvi16g1017 648 MobiDBLite consensus disorder prediction 625 648 - -
Vvi16g1017 648 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 550 633 IPR029048 -
Vvi16g1017 648 CDD HSPA5-like_NBD 36 410 IPR042050 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi2g198 Vvi16g1017 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1017 K09490 - vvi:100253826 1239.94