Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1024 ATGTTTGAAAACTCTTTTTTAAAAACAGTTTTTTGTTCTTTAGAAAAAAAAAAAACATATTTTGTGATCAAAACACGATTTTTCACCCAATTCGATTCCGGAATCCGGATTGGATCCAGCAACCCAAACACACGCAAAGCTCCCCAACAATCAGGTGCCAAGACACATTTTCTAGGGAAACAAGTAGACCCTTTTGGAGACCCAACGGAGTCGACTGACAACCCCAGGTGGGCCAACGTGAAATCTAGACCGTTTAAAACGGTTAGAGGCCGAGCTTCACTCTCTTATCCTCTCTACGCTAACCATACTTATCCCACCTGTTTCAGCCTCTCAACTCCTCCTCCTTCACCTTTGCAAATGGCTTTGCTGAGCCAGCAGTTGCAGAGATTCTTTCTCACGACACTCAACTGTACATCCAACTTGAAGGCCACCAAGAAGAACAACAGTGTTGCCCTCAAGGAGAGGGCAAGATGCTGCTCAGCCATAGCCATTGATGCCCCTTCTTTTTCGGGTGTGGCGGGAATCAGGTGGGGTTTGTGCCGCCTCCAAGGGCCCAGAGAGGAGATGGAGGACGAGGCTGTTGTTCGGTCTGATGGCCTTGATGGGTTCTCCTTTGCCGCGGTTTTTGACGGTCATGCCGGCTTTTCTTCTGTCAAGTTCCTCAGGGATGAATTGTACAAAGACTGTGTTGCAGCTCTGCAAGGCGGGTTGCTCCTGAGTGGGAAAAATTTCAACATAATTCGAGAGGCTTTGGAGAAGGCTTTTGAAAGTGCTGATGCAAAATTATTGAATTGGCTTGAGACGACTGGGGAGGATGTCGAGTCTGGTTCAACAGCCACTGTGTTGTTGATTGGAGACGATATGGTGTTCATCTCACATGTTGGTGACTCATGTGTGGTTCTCTCTCGCTCTGGAAAAGCAGAAGAATTGACCAATCCTCATAGGCCTTATGGAAGCAACAAAAGTTCGCTTGAAGAAATCAGAAGAATCAGAGAAGCAGGTGGATGGATTGTCAATGGAAGGATTTGCGGAGACATTGCTGTGTCCCGCTCTTTTGGTGACATGAGGTTCAAGACAAAGAAGAACGAGATGCTGGAGAAGGGATTGGAGGAAGGGAGATGGTCCCAAAAATTTGTTTCTCGTGTACAATTCACTGGAGACTTGGTCGTTGCATCTCCTGATGTTTTCCAAGTAGCTCTTGGATCAGATGCAGAATTTTTACTGTTAGCATCTGATGGCTTATGGGATTATATGAACAGCTCAGAAGCGGTAACCTTTGTTAGGAATGAACTTCGACAACATGGAGATGTTCAGGTAGCTTCTGAAGCACTTGCACGTGCAGCACTGGACCGACGCACACAAGATAATGTCAGCATCATCATTGCAGATTTAGGGCGGACAGACTGGCAAAGTTTGCCACTGCAGCAACAAAATTTATTTCTCGAATTGGTGCAAGCTCTTGGTACCATTGGCATTGTGACGCTTGGGATTTGGATGTCATCTCAGTTTAGTTTATGA 1518 46.05 MFENSFLKTVFCSLEKKKTYFVIKTRFFTQFDSGIRIGSSNPNTRKAPQQSGAKTHFLGKQVDPFGDPTESTDNPRWANVKSRPFKTVRGRASLSYPLYANHTYPTCFSLSTPPPSPLQMALLSQQLQRFFLTTLNCTSNLKATKKNNSVALKERARCCSAIAIDAPSFSGVAGIRWGLCRLQGPREEMEDEAVVRSDGLDGFSFAAVFDGHAGFSSVKFLRDELYKDCVAALQGGLLLSGKNFNIIREALEKAFESADAKLLNWLETTGEDVESGSTATVLLIGDDMVFISHVGDSCVVLSRSGKAEELTNPHRPYGSNKSSLEEIRRIREAGGWIVNGRICGDIAVSRSFGDMRFKTKKNEMLEKGLEEGRWSQKFVSRVQFTGDLVVASPDVFQVALGSDAEFLLLASDGLWDYMNSSEAVTFVRNELRQHGDVQVASEALARAALDRRTQDNVSIIIADLGRTDWQSLPLQQQNLFLELVQALGTIGIVTLGIWMSSQFSL* 506
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 21771555 21776235 - Vvi16g1024 Vvi16g1024 778673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1024 505 CDD PP2Cc 175 464 IPR001932 -
Vvi16g1024 505 ProSiteProfiles PPM-type phosphatase domain profile. 176 464 IPR001932 -
Vvi16g1024 505 PANTHER PROTEIN PHOSPHATASE 2C 57 125 501 - -
Vvi16g1024 505 Gene3D - 175 470 IPR036457 -
Vvi16g1024 505 SMART PP2C_4 166 462 IPR001932 -
Vvi16g1024 505 PANTHER PROTEIN PHOSPHATASE 2C 125 501 IPR015655 GO:0004722|GO:0006470
Vvi16g1024 505 SUPERFAMILY PP2C-like 171 465 IPR036457 -
Vvi16g1024 505 ProSitePatterns PPM-type phosphatase domain signature. 205 213 IPR000222 GO:0043169
Vvi16g1024 505 Pfam Protein phosphatase 2C 178 457 IPR001932 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1024 K04457 - vvi:100264113 759.599