Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1025 ATGGTGACGACGAGCTACCGGATTTTGTGCCATGACGTCAAGGCCGGCGGCGTAATTGGAAAGTCCGGCAGCATTATCAAATCGATTAGGCAGCATACCGGAGCTTGGATCAACGTCCATGAATTGATTCCCGGCGACGAGGAGAGAATTATTGAGATTTCTGATACTCGCCGGCGAGACCCAGAGGGACGAATGCCCCAATTCTCGCCGGCGCAGGAGGCGTTGTTCATGATTCATGATAGGATTTTGGAGAGTGATGCTGGGTTTGGAAATGGGATGGTGGTCTCTAGGATGCATGTGGGGTGTTTGTTGGGAAAGGGAGGGAAGATAATTGAACAAATGAGGATTGAGACCAAGACCCAGATTAGGATTCTGCCTAGAGATCACAATCTTCCCCGTTGTGTTTCCATGTCCGAGGAAATCGTGCAGGTGGTGGGTGATGTGAATGCTGTGAAGAATGCAATTGCAAATATTTCTTCACGCCTGAGGGAGAGCCAGCATCGGGACCGCAGTCATTTCCATGGACGAATACAGTCATCTCCAGAGCGGTTCTTCCCCCCTGATGACGATTATAGTCACATGAATAATGCACCTCGCCGTATGCCCATTGATGGGAACTCTTTTGGTTCACGTGTATCTACTGGTTTGGTGGGCACCAGAAGCAATAGCTTTGCCTCCCGCACATCTGGTTACACACTTGAATCTGGAGCTGCTCCTATTGCTGATAATGCACAGCAATTTTTAGGTGAGGATATTGTGTTTCGAATACTTTGCCCAGTTGACAAGGTTGAATGTGTTGTTGGGGAGTCAGATGGGATTATAGAATTGCTTCAGAATGAAATCGGTGTAGATGTTAAGGTTGCTGACCATGTAGCTGGATCAAATGAACAGATAATTGTCATTACTTCAGAGGAGGGCCCTGATGATGAGTTATTTCCTGCTCAAGAAGCTTTATTACATATCCAAACTCGTATTGTTAATCTTCTCCCCGATAAGGAGAATGTTATTACTACTAGGTTACTTGTTCCATCTAGTGAAATTGGATGCTTCGAGGGACGAGATTGCTCATTATCTGAAATGAGGAGATTAACCGGTGCCAACATACAGATCGTGCCAAGGGAACAGCTTCCTGCATTTATATCAGGGACCGATGAGCTTTTAGAGATTGTAGGGGAGATAAAAGCAGCTCGAGATGCTCTTGTTGAGGTGACATCAAGACTGCGGAGTTACTTATACCGGGAGTTCTTTCCAAAGGATATGCCACCACCTTCTATCTCTGCACCTGGCTCTCTTGAGGCATCTTCTCCCAATAACATAACCCCAGCTCGTGAAGGTCACACTGCAAGTGATCCTCCTACCACAAACTATCAGAATGTTCAAGCCATAGCATCAGTGCAGCCATCAAAGGACTCTGGAGGGACTGGTGGTGAAACAGTGAAGCAGAATGAAACTGTGCCAAGCGTTTTGAACAGAATCCCTGTAACGCTTGTCACCAGGAGTACACTTGAAGTTGTCATACCAGAACACGCAGTTCCCAAGCTCATAACCAGATCGAAAAACAAGCTTGCCCAGATCAGTGAGTGGTCTGGGGCCAATGTTACCCTGTTGGAAGATAGACTGGAGGCGACAGGAAAGATCATTCAAATATCAGGCACCCCTGAGCAGACTGAGAAGGCCCAGAGCTTGCTTCAAGGCTTTATTTTGAGCATTTCAGAAGACGGGCCATAA 1728 46.88 MVTTSYRILCHDVKAGGVIGKSGSIIKSIRQHTGAWINVHELIPGDEERIIEISDTRRRDPEGRMPQFSPAQEALFMIHDRILESDAGFGNGMVVSRMHVGCLLGKGGKIIEQMRIETKTQIRILPRDHNLPRCVSMSEEIVQVVGDVNAVKNAIANISSRLRESQHRDRSHFHGRIQSSPERFFPPDDDYSHMNNAPRRMPIDGNSFGSRVSTGLVGTRSNSFASRTSGYTLESGAAPIADNAQQFLGEDIVFRILCPVDKVECVVGESDGIIELLQNEIGVDVKVADHVAGSNEQIIVITSEEGPDDELFPAQEALLHIQTRIVNLLPDKENVITTRLLVPSSEIGCFEGRDCSLSEMRRLTGANIQIVPREQLPAFISGTDELLEIVGEIKAARDALVEVTSRLRSYLYREFFPKDMPPPSISAPGSLEASSPNNITPAREGHTASDPPTTNYQNVQAIASVQPSKDSGGTGGETVKQNETVPSVLNRIPVTLVTRSTLEVVIPEHAVPKLITRSKNKLAQISEWSGANVTLLEDRLEATGKIIQISGTPEQTEKAQSLLQGFILSISEDGP* 576
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 21779446 21784699 + Vvi16g1025 Vvi16g1025 778674

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1025 575 MobiDBLite consensus disorder prediction 422 455 - -
Vvi16g1025 575 ProSiteProfiles Type-1 KH domain profile. 93 158 - -
Vvi16g1025 575 MobiDBLite consensus disorder prediction 428 455 - -
Vvi16g1025 575 MobiDBLite consensus disorder prediction 162 177 - -
Vvi16g1025 575 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 4 54 IPR036612 GO:0003723
Vvi16g1025 575 Gene3D K Homology domain, type 1 92 167 IPR036612 GO:0003723
Vvi16g1025 575 ProSiteProfiles Type-1 KH domain profile. 3 75 - -
Vvi16g1025 575 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 328 416 IPR036612 GO:0003723
Vvi16g1025 575 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 1 490 - -
Vvi16g1025 575 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 493 569 IPR036612 GO:0003723
Vvi16g1025 575 PANTHER RNA-BINDING KH DOMAIN-CONTAINING PROTEIN RCF3 1 490 - -
Vvi16g1025 575 Gene3D K Homology domain, type 1 498 569 IPR036612 GO:0003723
Vvi16g1025 575 CDD KH-I 501 564 - -
Vvi16g1025 575 CDD PCBP_like_KH 5 79 - -
Vvi16g1025 575 Gene3D K Homology domain, type 1 3 85 IPR036612 GO:0003723
Vvi16g1025 575 Gene3D - 250 411 - -
Vvi16g1025 575 CDD PCBP_like_KH 93 159 - -
Vvi16g1025 575 ProSiteProfiles Type-1 KH domain profile. 499 563 - -
Vvi16g1025 575 Pfam KH domain 501 564 IPR004088 GO:0003723
Vvi16g1025 575 Pfam KH domain 93 159 IPR004088 GO:0003723
Vvi16g1025 575 Pfam KH domain 6 54 IPR004088 GO:0003723
Vvi16g1025 575 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 245 310 IPR036612 GO:0003723
Vvi16g1025 575 MobiDBLite consensus disorder prediction 162 186 - -
Vvi16g1025 575 ProSiteProfiles Type-1 KH domain profile. 251 318 - -
Vvi16g1025 575 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 93 169 IPR036612 GO:0003723
Vvi16g1025 575 SMART kh_6 250 323 IPR004087 GO:0003676
Vvi16g1025 575 SMART kh_6 334 408 IPR004087 GO:0003676
Vvi16g1025 575 SMART kh_6 498 568 IPR004087 GO:0003676
Vvi16g1025 575 SMART kh_6 2 83 IPR004087 GO:0003676
Vvi16g1025 575 SMART kh_6 87 163 IPR004087 GO:0003676
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1025 K21444 PCBP3_4; poly(rC)-binding protein 3/4 - vvi:100258944 1107.82
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g1025 . . . . Bpe03g00230 . . . Cmo16g00045 . . . . . Sed07g0871 . Cpe14g00031 Bhi01g01505 Tan01g0081 Cmetu06g1355 . Hepe07g0050 Mch10g0048 . . . . . . . . Cone1ag0995 Cone5ag0699 . . . . . Cme06g01156 Blo07g00331 . . . . . . . . . . Cma16g00038 Cma18g01323 Car16g00038 Car18g01235 . . . . . . . . . Cla05g00979 Cam05g1071 . . . . Cre05g1090 . Csa03g01974 Chy06g01186 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007315 0 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 2 1 37