Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1032 ATGGCTTCTACGACAAAATGCAGAGTTTTATGTACTCGTGTACTACAAATCTTTTGCAGGGCTTTTGAATTTCCACAACAAAATGGCTTGGTGTATCCCATGGACAGAGTTTTTGAGTATGACCCAAGCTTGTTTTCATACCAAACAAACTACAATCTTCCCAACTTCGTAGACTTGAGAGAGTTGGAGGATCATTTTCTTTTTCTGGACCAGAATCTTCCTTCTTGCAATGGTGTCTCAATCCATGATCACCCAGATGATTTTGATCATTATCTTGAAGTTGGTAGTGAAGAACACTTGACACAACTCCCCTCCGGAAATGACTCTGAGGATCGTCTGAAGATTGGAGGTGGATTCAGCGACCTGCAGAGTGTAATTCATGGCGGTTTTTCGGGTTCTTGGAAGCATGAAGAGGGCACACAACAAAGCTCAAGGTCGAAGACGGCTGCATTGGAGATGGACGATATAAAGCAGTATTTCAACGTGCCCATAACCAGAGCTGCCAAGGAGCTGAAGGTGGGATTGACAGTATTAAAAAAGAGATGCCGAGAGCTCAATATCACTAGGTGGCCTCATAGGAAGATCAAAAGCTTGAAAGCTCTGATTACCAATGCCAAGGTACTTAACAAAACCCGGGAACTGGGGTTGACAGAGGAGATAGAGATGCTGGAGGAGCATAGAAGGATGTTGGAGAAGCAGCCGGAGATGGAACTAACAGAGAAAGCTAAGAAGCTGAGGCAGGCATGTTTCAAGGCCAATTACAAGAGGAAAAGAGCTCTGCAGGCTCCATTTACTCAGATTTCATATGAATAA 813 43.91 MASTTKCRVLCTRVLQIFCRAFEFPQQNGLVYPMDRVFEYDPSLFSYQTNYNLPNFVDLRELEDHFLFLDQNLPSCNGVSIHDHPDDFDHYLEVGSEEHLTQLPSGNDSEDRLKIGGGFSDLQSVIHGGFSGSWKHEEGTQQSSRSKTAALEMDDIKQYFNVPITRAAKELKVGLTVLKKRCRELNITRWPHRKIKSLKALITNAKVLNKTRELGLTEEIEMLEEHRRMLEKQPEMELTEKAKKLRQACFKANYKRKRALQAPFTQISYE* 271
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 21822210 21823097 + Vvi16g1032 Vvi16g1032 778681

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1032 270 PANTHER PROTEIN RKD4 140 259 IPR044607 GO:0003700
Vvi16g1032 270 Coils Coil 213 233 - -
Vvi16g1032 270 Pfam RWP-RK domain 151 198 IPR003035 -
Vvi16g1032 270 ProSiteProfiles RWP-RK domain profile. 136 219 IPR003035 -
Vvi16g1032 270 PANTHER PROTEIN RKD4 140 259 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1032 - - - vvi:100265885 496.508
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g1032 . . . . . . . . . . . . . . Sed05g1782 . . Bhi01g01498 Tan01g0086 Cmetu03g1368 . Hepe07g0054 Mch10g0052 . . . . . . . . . . Cone14ag0006 . . . . Cme06g01149 . . . . . Bpe12g00349 Bma08g00389 . . . . . . . Car18g01240 . . . . . . . . . Cla05g00975 Cam05g1067 Cec05g1073 Cco05g1065 Clacu05g1059 Cmu05g1010 Cre05g1087 . Csa03g01978 Chy06g01193 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002327 1 2 1 3 2 2 3 2 2 4 1 2 2 4 2 2 2 2 2 2 1 2 2 2 2 1 2 3 2 2 62
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14110 PF02042 RWP-RK 4.90E-22 No_clan Vvi TF