Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1035 ATGGGTGAATACAAAATGGAGGAGATGTCACTCCTAGCCCTATTCGAACAAGCTCGGAAGATTCATCTAGCGGCATCTGAATCAGGCGCCGATCAGGACGCTGTGAGGAAGGGCTGTGAGGCGCTGGAGAAGTGCGAGGAGATGGTAAGCAAGCTGGGGTTGTTCTCCTCGAACGAGACTAAGGATGATATCAGCACAAGTAATCTCAAATATCTTCTGGTACCTTTTTATCTTGCCGAGTTGACTGAGAAAATTGCACAGGATGATAGGATACAGATTCTTAAGGTTTCCCAAGCAAAATTAAAGGAATTCATTTCATTTTGTGAGGCAATGGAGCTTGTACCAGAAGAGGAGTTAGAAACATCCACGCAGGGGGGTCCAAATTCTTTCGCAGATCGAAGGGCAAAAAAGATTGCTCGGTTCAAACGTCAAAGAGCTGCAGAGTCAAAACTATTGGAAATAAAGGAGCGGAAGGAGCGGCGTGGGCGTTCAACTAAAGCATCTGCGTTATCTACTCCTGTTGATACTGGAGATGAAGATGTGCTGGATGATGATGGCGAGGAAGAACGGGAGGCTTGGCTTACAACCATCTCTTTGGCACTCTGTAAGGCTTTTGATCTACTGGAAATGCTCAAGAAAGAGGAAGAAATGCTTTCTGCTATCAAGGAAAAACAATTACAGGAAGGTGATAAGGAAGTTTCTCGGGCTATTCTTGATGAACGTGCCAAGAGAACAGAAGATTGGCATCGTGATGCTGCAGCTCGGGCACAATATACAAAGCCTGCACCGCCCATTACATGTGCCACATTCGCTCAAGATGTTTTAGAAGGGAGAGCTACAGTTTCTCAGGTACATGAGCACAAACACCAGCCAATGATATTTGGACCAGCAAGTCTCGTGGGTGGAAGGCTAACAAATGAAAGGGAAATAATGGCAGCACAGGTTTTCCAGCCTAGTCACAGACTGCCAACTATGAGCATAGAGGAAGCTGGATTAAGGGAGATGGAAATGATGAACAAATGGCAAGAGAGGAACGCAAAGCTCATTGAAGAAGCCAATTCCTCATGGCACAAGGAGAGTCGGAAACCAGGGCCAAGTGAAGAGGATGATGAAGATGATGATGCTGCCCAAGAGAAGGCAAGGGCATGGGATGACTGGAAAGATGATAATCCTCGTGGTGCAGGCAATAAGAAGCTCACTCCTTGTGGGTAA 1212 46.29 MGEYKMEEMSLLALFEQARKIHLAASESGADQDAVRKGCEALEKCEEMVSKLGLFSSNETKDDISTSNLKYLLVPFYLAELTEKIAQDDRIQILKVSQAKLKEFISFCEAMELVPEEELETSTQGGPNSFADRRAKKIARFKRQRAAESKLLEIKERKERRGRSTKASALSTPVDTGDEDVLDDDGEEEREAWLTTISLALCKAFDLLEMLKKEEEMLSAIKEKQLQEGDKEVSRAILDERAKRTEDWHRDAAARAQYTKPAPPITCATFAQDVLEGRATVSQVHEHKHQPMIFGPASLVGGRLTNEREIMAAQVFQPSHRLPTMSIEEAGLREMEMMNKWQERNAKLIEEANSSWHKESRKPGPSEEDDEDDDAAQEKARAWDDWKDDNPRGAGNKKLTPCG* 404
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 21836490 21842723 + Vvi16g1035 Vvi16g1035 778684

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1035 403 Pfam TAP42-like family 13 391 IPR007304 GO:0009966
Vvi16g1035 403 MobiDBLite consensus disorder prediction 157 187 - -
Vvi16g1035 403 PANTHER PP2A REGULATORY SUBUNIT TAP46 1 403 - -
Vvi16g1035 403 MobiDBLite consensus disorder prediction 348 403 - -
Vvi16g1035 403 MobiDBLite consensus disorder prediction 376 394 - -
Vvi16g1035 403 MobiDBLite consensus disorder prediction 348 365 - -
Vvi16g1035 403 Gene3D - 9 221 IPR038511 -
Vvi16g1035 403 PANTHER IMMUNOGLOBULIN-BINDING PROTEIN 1 1 403 IPR007304 GO:0009966
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1035 K17606 IGBP1, TAP42; immunoglobulin-binding protein 1 - vvi:100267623 760.755
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g1035 . Blo15g00086 . . . Bpe07g01017 . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag0008 Cone15ag0009 . . . . . . Bda06g00786 . . . . Bma12g01205 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008471 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 35