Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1038 ATGGAAGAAGAAGTTCCCCCCCAGAGGGGCAAAAAGAGGTCCATTGTGGAAATTTCTGGTGATAATGATCTAGGTGCCATCTACAAGTTTAAGATTCTCTTACCCAATGGCACAAGCTTGGGTTTGAACTTACATGAACATAAGTTGTCCAACCTTCTAATGCCTCTACAAGAGTTCATTGGTTTGGTGAGAACAGAGTACTTCAGAACTCGTCGCCAACCTGAATCGCCTGGAACGAGGCAAAAAATAATGTGGAAAAGTAAAGATATATTTCTTGTAGACGCATCTGAAAACAGGATGAAACATACTGTCAATTTCAGGAAATTTGAGCCACATAAATGTCATATTTTACAACTTAATGATGGGTCAGGTCAGAGTGCTGATACCTTTAAGAACATGTGGGATTTGACACCAGATACTGACCTATTAGCGGAACTTCCTGAAGAGTATGCATTTGAGACTGCTCTTGCGGATTTAATTGACAATTCACTGCAAGCAGTATGGTCTAATGGTATGAGTGAGAGGAGATTGATTAGTGTGGATATTGTCGAAGATAGGATTTCAATCTTTGACAGTGGTCCTGGAATGGATGGCAGTGATGAAAACTCTATTGTGAAGTGGGGAAAGATGGGTGCATCACTTCATAGGTCCTCCAAGGCACAGGCAATAGGGGGCAAGCCTCCATACCTAAAGTGTCCACAGCAGTGCAGTCTGTGCAAAAAAGAGGGAAAAAAACAGAAGAAAGGGAAGAAGAAAATCATAGGAATCACACATTTTATGCTCAATAATTCAGTTGTTAAAACTCTGAAATTCAATGTGGTTAATTTCCTGCAAAGAATATTTTGTAGACATTGTCAACCTATTTATGAAATGCCCCTGATCATATATGCACATGCTTGTGTAAGAAGAAAGAGAGATTATAGAAAAAACATGAGACAGATGAGAGAGTTCCGTTGGAGCTGGGAAATATGGGATGCTTTGTATTGTTTATTTGAGATTGAGTTCAAGCCCTTTTTTGGAATGTTTGGATATGGAGGTCCTATTGCATCCATGCATCTTGGGAGGTGTGCTTTAGTTTCTTCCAAGACAAAGGAGTCCAAGAAAGTATATACTTTACATCTTGAGAGGGAGGCTCTTCTCAGCAGTTCTGGTTCTGACCTCACCTGGAGGACTTCTGGAGGCATCAGGAATCCATCAGAAGAAGAAACCGAGAAATCACCTCATGGAAGCTTTACAAAGGTTGAGATTTTCAAGCCAAAAATTGAAAGGTTGAACGTATTTCAACTTCAACGCAAGCTGAAGGACATCTATTTTCCATATATTCAGGTGGCAATTGGGGGGGTGGTTCAATGTGATGAAGTGTGTGACACAGGAAAGACTAACACACCGGTTGAGTTTCAGGTCAATGGGTTAGATTTAGCCGAAATTGATGGTGGGGAAGTTGGAACTACAAACTTGCATTCTTCCAATGGCCCTGAGTTTGTTCTGCAGCTTCGTTTTTATGGTAACCAAGACAATGTTGCAACCAAAAGCCCTGGTTTAAGATCGTCTCAAGAAGCTAATGCACGCCTAAAGTGTGTTTATTTTCCCATTGTCGAGGGTAAAGAGAATCTTGAAACGATTTTGGAAAAACTAGAAGCTGAAGGATGTGGGACTAATGAAAATTATGATACATTTAGTCGTGTATCTATTCGGAGACTCGGTCGTTTACTTCCAGACGCTCGTTGGTCACTACTTCCTTTCATGGAACATAAGCTGAAAAAGGGAGACAAAGGCCAATTGTTGAAGAGATGTTGCCGGAGAGTAAAATGTTTTATTGATACTGATGCTGGTTTTAACCCTACACCTTCTAAGACGGATTTAGCACACCATAATCCTTTTACCAAGGCTCTAAAGGACTTTGGTAATAAGCCACCTGAGAAAGGGAGAGGTAATATAAATGTTGAAATCCTTAGAGATGGAAAGTCATTAACTCTCTTGCAACTGGAAAAGGAGTATCTAGATTGGATTTCCCAGATGCATGATCTTTATGATGAAGAAATTGACTCTGGTGAGGACCAACCTGTCATTGTCGTTGGCTCTTTGAACAAAAAACAGCTTGGTATTTCTTCTGATGTAGTAAGGGTCCATGAGATTATAAGAAGAAAAGGAAAATCTTGGAAACGTGGCCAGAAAATTAAGGTTCTTAAGGGAGCATGTCCAGGGTGTCACAAGAGCAATGTCTTTGCGACATTGGAATATATTCTGCTAGAAGGTTTTCAAGGAGATGCTGGTGGAGAAGCTCGGCTAATATGCAGGCCCTTGAGTCTTCCAGATGAGGATGGTTGTATCCTTGCAGTGGACGATGGGGCTGCTAGTTTTGACTGCCGTGGCTCTCTATCTTTACCCATTAGTGTGATTGATTCTGGAAAGTGCCTTGCCGTTGAAAGTTCTGAATGGCTTTTCCAACTTGAGAAACAACGTCAGAAAGCTCCTTCGACAATTGACATTCTGAGTGAGAGACATTGTCTGGAGTTGGAGGTTGATGGGGCATTACCTGTTGATGCTCCGGTTCATGCTGGACAAGTTCCGCCTAAGGAAATTGTTGCTGTTGTTCGTCCTGCCAGTTTTTTATCTATGGAAGTGAAATTGATGGATGGCACTAAGGATACCAAACATATTTATTCAAAATGTGTGACACCTTCATCCCGTAATGGGTTTCATGGTTTATATATCTTCCCACTAGGATGCAAGTTCCCACAGTTATTTCAAAAAGCTGGTGTTTACACATTTACAGTATTCCTTAAAGGCTCAAGTTTTAAGAGTTGTGAAAAAAGAGTGCTAGTTAAGGCATTGCCTAAGGTTTCGAGTTGGAGATTTTCAAGTGATATACAGAATACTGTGTACAGTGTAAGGGCTGGTTCGTGCTTACCACCATTTTCTATTGCTTGTTATGACTCATATGAAAATCAGATTCCATTCACATCCATACCAGAATTTATCATCAAAAGTAACTGGAATGGAGGGGTACTTGCAGATTTTGATAAAATGAAGTTGGAACTTTCATCCGATAATTTGACTCTTAAAGTTAAGGATGTACTAATTGAAAGCAGTGACTTGGACAAGATTCGACCGAGTTATGCAACTACATTGGTGCTATGTCCACGTGATGAGTTGCCCTCAATTTCTGTTGCATGTGAAGTTAATCCTGGACCTTTAGAACGTGCCATAGCCCAGCCACCAGTATCAGACAACCAGTTGCTTCCTGGATGTGTGATTGAGGAGCTTGTATTAGAGGTATCTTCGCACATTGTAATTATTCTTCCCCATGATGATCAATTTATACACACTATTGTTCTGTGTATGCTTTTTCTTCCCCTTTTTATGTTTGATGCATATGGTAATCATGCCAGAGAAGGGTTGGAAGTTCAGTTTAATGTGGATGGATTTTGTTTCCAAGATCATAATGGTTTAAAGCGTAAGGTGGATGATCGTGGATGCATTGACCTTAGTGGCCTCTTGAGAGTCACAACAGGGTATGGAAAAAATGTTTCCCTATCAGTTTTATCTGGTAACAAAGTAGTTTTCAAGCAAGAGTTGCAAACAGAGAAAAGAGAGCTAAGAGCTGCATCAATAGTACCTCAGTCTTGTGCTGCTGGGTCACAACTCGAAAATATTGTCTTCGAAATCATCAACTCTAAGGGTGAAGTTGATGAAACTGTTCATGAGGAAGAGAAACATGGACAATTCCATACGCTTACAATAATGTCTGATTCATTTTATTTGGATGGTTCTGTAAGATTCGCTTTCAGGAATGGACGCTGCATTATTCCTACTATTCCTCTCCCCCGAAAGCAAGGGGACTTCACCTTTCTAGCTGCTCACTCCTGTCATCCAGAGCTATCTTTGGCTGTCAAGGTTTCTGTTGTGGAAGTCCTAAAAGTGAAGCAGGAAGATGTCCAACTTCAATATCCAAATGAAAACATGTTGCTCCTCCAGGATTCACCTGCTCCAAGGCATGTAGAGAACAGCCTAGTGGAGTCACTCATGAATGACGAGAAGGAAATTGAGGATGACATTTGCAAAATTGGTTTGTTTATTGGAGATAATGAAAGGAAACTGGAATTGCTTCATAAACAGAAGGGAGATATTGAGCAATCCATTGAGAAATTGCAAGCTTCTGTAGAATATGATTCATTCAACAACCATCGGGGCTACTTGTCTAAGAAAGAATCAGTGATGAGATGCATTGAAAAAAAGGATAAATCCGCAGCTGCTTTTTTCTGCAATCTTTCAAGAGAGATTCCATTCCAAGATCCAGTATCTCAGCTTATGAAAGATATAGTTGGTGTGGTTGCACTTCTTGCAACTGTTCGTATCAATCGGCTTGGCAGGATGTTGGCTGAATATTTGGGTGAAGATCAAATGCTTGCAGTTGTGTGTAGATCCTATGAAGCTGCAAGTAAGCTTGAGAAGTATGAATGGGATGGAAAAGTAGACCGTGAACATGCTCTTTATGCAGTAGCAAAAACATTTGGAAAACCGATAAATGACCGGTTTCTTGTTATTTGCCTCGAGAATATAAGGCCTTACATAGGAGGGTTTCAGGACAATGATCCTCAGAGGAAGCTGAACATTCCAAATCCTATTTTACCCACTGGGGAGATGCCTCCAGGGTTCTTGGGGTATGCAGTTAACATGGTTGACCTAGAGTCCCATCATTTACTTACAAGGACCACTGCAGGGCATGGTCTTCGGGAGACATTGTTCTATTGTCTATTTGGTGAGCTGCAGGTTTATCAAACCAGGGAAGACATGAAGAAGGCTTGCTTCTATGCAAGACATGGTGCTGTTTCTCTTGATGGTGGGATTATGAAAGGAAATGGAGTCATTTCTTTTGGATGTAGGGAACCGCAAATATGGTTTCCAGTTGCTAACCTGGAATCACCAAAAAATGTTAGAATCCTGGAAGTGATAGAGGAAAAGAGAACTTCTTTGAGGCTGGTCCACAATGAAATAGGCAAACTGACAAAAATCATTAACAAAGCTCAGAAGAAGTTACAGAAGAAAATTTCACGGTGTCGCAAGCTCATGGATCGCTTAGAACCCTGTATGAAAGGCCACTACCTGGAGTACAATACGAATACAATAAACAGCCTGGAAAACTCGCCAAAATGA 5157 40.78 MEEEVPPQRGKKRSIVEISGDNDLGAIYKFKILLPNGTSLGLNLHEHKLSNLLMPLQEFIGLVRTEYFRTRRQPESPGTRQKIMWKSKDIFLVDASENRMKHTVNFRKFEPHKCHILQLNDGSGQSADTFKNMWDLTPDTDLLAELPEEYAFETALADLIDNSLQAVWSNGMSERRLISVDIVEDRISIFDSGPGMDGSDENSIVKWGKMGASLHRSSKAQAIGGKPPYLKCPQQCSLCKKEGKKQKKGKKKIIGITHFMLNNSVVKTLKFNVVNFLQRIFCRHCQPIYEMPLIIYAHACVRRKRDYRKNMRQMREFRWSWEIWDALYCLFEIEFKPFFGMFGYGGPIASMHLGRCALVSSKTKESKKVYTLHLEREALLSSSGSDLTWRTSGGIRNPSEEETEKSPHGSFTKVEIFKPKIERLNVFQLQRKLKDIYFPYIQVAIGGVVQCDEVCDTGKTNTPVEFQVNGLDLAEIDGGEVGTTNLHSSNGPEFVLQLRFYGNQDNVATKSPGLRSSQEANARLKCVYFPIVEGKENLETILEKLEAEGCGTNENYDTFSRVSIRRLGRLLPDARWSLLPFMEHKLKKGDKGQLLKRCCRRVKCFIDTDAGFNPTPSKTDLAHHNPFTKALKDFGNKPPEKGRGNINVEILRDGKSLTLLQLEKEYLDWISQMHDLYDEEIDSGEDQPVIVVGSLNKKQLGISSDVVRVHEIIRRKGKSWKRGQKIKVLKGACPGCHKSNVFATLEYILLEGFQGDAGGEARLICRPLSLPDEDGCILAVDDGAASFDCRGSLSLPISVIDSGKCLAVESSEWLFQLEKQRQKAPSTIDILSERHCLELEVDGALPVDAPVHAGQVPPKEIVAVVRPASFLSMEVKLMDGTKDTKHIYSKCVTPSSRNGFHGLYIFPLGCKFPQLFQKAGVYTFTVFLKGSSFKSCEKRVLVKALPKVSSWRFSSDIQNTVYSVRAGSCLPPFSIACYDSYENQIPFTSIPEFIIKSNWNGGVLADFDKMKLELSSDNLTLKVKDVLIESSDLDKIRPSYATTLVLCPRDELPSISVACEVNPGPLERAIAQPPVSDNQLLPGCVIEELVLEVSSHIVIILPHDDQFIHTIVLCMLFLPLFMFDAYGNHAREGLEVQFNVDGFCFQDHNGLKRKVDDRGCIDLSGLLRVTTGYGKNVSLSVLSGNKVVFKQELQTEKRELRAASIVPQSCAAGSQLENIVFEIINSKGEVDETVHEEEKHGQFHTLTIMSDSFYLDGSVRFAFRNGRCIIPTIPLPRKQGDFTFLAAHSCHPELSLAVKVSVVEVLKVKQEDVQLQYPNENMLLLQDSPAPRHVENSLVESLMNDEKEIEDDICKIGLFIGDNERKLELLHKQKGDIEQSIEKLQASVEYDSFNNHRGYLSKKESVMRCIEKKDKSAAAFFCNLSREIPFQDPVSQLMKDIVGVVALLATVRINRLGRMLAEYLGEDQMLAVVCRSYEAASKLEKYEWDGKVDREHALYAVAKTFGKPINDRFLVICLENIRPYIGGFQDNDPQRKLNIPNPILPTGEMPPGFLGYAVNMVDLESHHLLTRTTAGHGLRETLFYCLFGELQVYQTREDMKKACFYARHGAVSLDGGIMKGNGVISFGCREPQIWFPVANLESPKNVRILEVIEEKRTSLRLVHNEIGKLTKIINKAQKKLQKKISRCRKLMDRLEPCMKGHYLEYNTNTINSLENSPK* 1719
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 21873516 21906584 + Vvi16g1038 Vvi16g1038 778687

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1038 1718 Coils Coil 1367 1387 - -
Vvi16g1038 1718 Coils Coil 1673 1693 - -
Vvi16g1038 1718 PANTHER EN/SPM-LIKE TRANSPOSON-RELATED 645 1700 - -
Vvi16g1038 1718 PANTHER EN/SPM-LIKE TRANSPOSON-RELATED 645 1700 - -
Vvi16g1038 1718 SUPERFAMILY Smc hinge domain 1435 1630 IPR036277 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Vvi16g1038 1718 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 149 211 IPR036890 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1038 K23113 SMCHD1; structural maintenance of chromosomes flexible hinge domain-containing protein 1 - vvi:100252197 2641.68
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g1038 . . . . . . . . Cmo16g00053 . . . . Car15g00958 . . Cpe14g00037 Bhi01g01493 Tan01g0091 . . . Mch10g0576 . . . . . . . . Cone1ag0984 . . . . . . Cme06g01145 . . . . . . . . . . . . . Car16g00042 . . . Bhi12g00642 . . Lac11g0158 Hepe06g0792 . Lcy12g0135 Cla05g00972 Cam05g1063 Cec05g1069 Cco05g1062 Clacu05g1056 Cmu05g1007 Cre05g1084 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0071972 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1