Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1040 ATGGAGGATGAGAGATGCAGGAGGAGAGGTAGTCCCAACTGGAGGTGCAGTGAAAGGGCTTTGCCTGGAAAAACACTTTGTGAGAAGCACTTGTTCTGCCAGCTGATTCGGAATCGGGTGAAGACGGCGAGGCTTGCGGAGGGGAGAGACGGGGAGGTGGGTCGCCCAAGTGGGAAGCAGAAGCTGGCGGCAGCTGGGGAGGAGATGGTTGGTGGTGGCGGTAAAGAGGATCGGGGGTTTTCGGGTGAAATCCTGGCCGCCGGCGAGGGAGGAGGCGGTGAGGTGGTGGGTGGGGGGGAGATGCCTGAGGGGTTTGGAGGAGGAATGTGGGGGTGGTTTGGGGGAGATGAGGGTGGAAATGACGGTAATGCCCTTGGCAGCGGTGGAGTTATGGGCGGCTCTGCTGGAGACGGCAATGGTAGGGAAGTGGATGGTGGAGGGGTCGGTGAGCGCGGCGTCGCGAGTGGAAATTGGGCTACTGGCCGTGGGAATGGCGGTGGAGTAGTTGAGAGCGGCGGAGACGGTGATTGGGTCTCTAGTGGTGGAATTGGGGGCTGCTCCAGGGAAGAAGCCGGTGGAAATGGCAGCGGCGATGTTCGGTTAATTGAAAGCCTTGCGGGCCATTCCGGTGGAAATGAAGGCGGCGGCGAGGAAGTCGTTAAGGGAGGCGAGGACTCTGGTCGGGCTGCCGGCGGTGGAGGACTTGTGGGCTACCCCAAGGAAGTCACTGGTGGAATTGGCGGCAATTCCGGTGGAAGTGGCGGTGGAATTGGAGGAATTGAGAGTAGGTCCGACGGTAATGGCCACGGGGATGATGTTGGGGAGAAGAAGAAAAGGCGAGGCCGGCCAAGAGGTTCAAAAACCAGAAGGAAAGGTGAAGAAGTTCCGGGTCAGTCTAGGGAGAGCACTGGCGGGAATGGTGGTGGAAATGATGGGAATGGGTGCAATGCCAGTGGAAATATCGGTGGAGATGAGATTGTTGTGTTGAAAAAGCGAAAGCTAGGCCGGCCCAAGGGTTCAAAAACTAGGAGGAACGTTATCGATGGTGAGATAGTTGAGCTCCCAATCGGTAATTGGGGTGGAAGTGAAGTAATTGGTGGCCTATCCAGTGGGAATGGCAGGGGTGAAATTGAAGGAACTGGAGACCTATCTGGTGGGAGTGGCAGGGGTAGTGGTGAAGGGATCGGAGGCCTGCCTGGTGGGGATGGCAGTGGAGGAGAGATTATGGTGAAGAGGCGAAAGCTAGGCCGACCTAAAGGTTCAAATACTAGGAGGAGGATTCCTGATGGTAGAGAACTCCAGGTATGGGCAGGTGAAACAGTTGAAAATGATGGTCTGGCTCTTGATTTGGAAGGAAACCGATGGAAGTCTGGTGCATTCCATGGTGGAAACAATGGGGAAGGATGGAAGGTTAAGCATGGGCGTGGCCGACCAAAAGGGTGGAAGAAGAAGGGTAGGAAGAGGAAGGTTTTTTATGGTGGAGAACTTCGGGCTTTGGAAGGTGTGAAGAAGAGGGGAAGGAAGAGGAAGATTGTTGATGGTGAAGAGCTTTGGGATTTGAAAGGGTTGGAAAAGAGGGGGAGGAAAGGGGGCATTTTTTATGGGAAAGAACTCCAGGGCAGTTCCTGTGAGGCCAGAATGGTGGATTTACTTGCCACATTGCAAAGTTTTGCTCCTTATAGTGGAGCCGTTTTGGCTGAATACATTAAGAAACAATATGCAGCAATTACTAGTGTTCCCTCTAAGCAGAAAGTTTGGCGGCAGCCTGATTTGGCCAAAATGGTGGGCCTCCTTGCTACTTTAAGGGATGTTGTGCCTTATAGGGGAGAAGTCCTGGCCGAAAATTTTCTGTACTTCAAATGGCGTAGTTCAATTTCTGCATTAGAGTACCTGGCTCCTTGTAGAGGAGGTGTTCTGGCTGAATATTTCATGTATCGTGAACGATCCAGTTCAATTCCTTATGATGACATCTACAAATGCGAATTTGATGAGGCCCCACTTGTGACTGAAGAGATTCAGGATCAGTCTGTTCAAGGTATTAGAGTAAATGAAGGTCCCAGTCACAGTGAAGGCATTGGAGTAGGTGAAGGTCCAAGTTCCACTGAAGGAATTCAGGGGCAGTATGGTGGAGCTGCTGGCGGAAATGATGGTGGGAAGCTTGGTGCTAAAGAATTTTTGGGAGGGTTTGGTGCATTTGCAAGGCAAAAGGATGGTGGATATGGATTTAGTAGGCTAAAGAACAAATGCCGCAGACTAAAAGGTTCAAATAATGGTGAAGAGATTGGGGGCTGGTCTGGTGAAGCCAGTAGGGAAAATGGTCCTCAGAAAGAAATTCAGGGCTGGTCAAGTGAAGCTTGCTGTCGAAATGATGGAGACGAGATGGTCAGTCTGAGAGGTAGGTGTGACAGGCCAAACAGTTCGGAGGATTGGATGAACGAGCTTAACAGGAGTGGTGGAGCAACCTGCACTATTGATAGGAGAAGCGAGATCATTTCTTCAGAGGGTAAGTGTGGCTGGCCGCAGGTTATAGAGAACAAAAGGACCATTCTTGCTGCTGAACAAGATGGGATCATTCCTTTTGAAGTCACTGGCTGGAATGATATGGGGGATGAGACTGAAGGTTTGGAGAATAAGAAGAGTGGTCTCATAGCTATAGAAGATCGTGGTTTGCCTGGTGAAGTTATTGGTCGTGATGAGAAGCCAAATGAGATTTTTCGGCAGAAGGCTAAGCGTGGCCGGCCAAAGGGTTCAAAGAACAGGATTCCATGTATCCCTAAAGAAGAACAAAGCCAGGCCACTGCCAGTAATTTTTTGGGTGGAAATAACAGCGGAGATGTGAATATTTCTTGGAAACGTAAGCCTGGCCGGCCAAAGGGTTCAAAGAACAAGAAGGTAATCCTTAATGGTGAAGCCCTGAACAAGATTCCAATGCTGAATCAGGAACATCAGATGCCTGTTTCAAAGATAGAAGAAGATCTTAACAAAGAAGGCAGTTTACAGGTTGAGTATGTGAGGGACTGTGGCAATGCACAGATGAGTAATGGTGAGTTATTAACTGATACCGGCAATGTTCATAAGAGGCCCAGAGGAAGGCCGAAGAAGTTGAAGGACCATCGGGGGGAATCTAACTGCATTAAAGAGGGAAAATTCAATGAGAATGGATTGGCGAATTCAGGATTATCAGATGCTAGCAATGGGAAAAGAGAGCAGAGGAGTTTAATGTGTCATCAATGCTTGAGGCATGCCAAGAGTGGTGTTGTCGTTTGTTCCAGTTGCAAAAAGAAACGCTATTGCTATGAGTGCCTTGCGAAATGGTACCCGGAGAAAACAAGAGAGGACATAAGGAATGCATGTCCATTCTGCCGTTGCATTTGCAATTGCAGAATGTGTCTCAAACAGGATTTAGTCGTAATGACTGGTCATGGAGAAGCAGATACAAATATCAAATTGCAAAAGTTGCTTTACTTGCTAGACAGAACTCTGCCTCTCCTCAGACATATTCACGGGGAGCAGAGCTCTGAGATACATGTGGAAGCCCAAATACGAGGTGCTCAATTGACAGAAGAGGATATAATGAGGTCAATACTTGACAAAGATGACCGAGTGTATTGTGACAATTGCAATACATCCATTGTCAATTTACACAGAAGCTGCCCCAATCCTGATTGTTCTTATGATCTGTGTCTCACTTGTTGCCGGGAACTAAGAAAAGGTTTGCAGCCTGAAGTGAAGGGCAGAATTCCTGCACATGATGAGAGGTATGGTTGGGAGATGAATATGGATGGCAGCATCCCTTGCCCTCCAAAAGCACGTGGAGGTTGTGGTACTGAGACACTTGAACTAAGACGTATCTTTGAACCTAATTGGGTAGACCACCTGATCAAGAGTGCAGAGGACCTTACAATGAATTTTGGATCACCAGACATTGATTTTTCTCAGGGATGTTCATTGTGCCTTCCTACTGCTTCCACAGGAAGTGGAGAAAAGCATTGTGAAGTAAGGCGGGCAGCTTTTAGGGAGAACAGTCATGACGACTTTCTCTACTGTCCAAATTCTGCTTGCTTGGGAGACAACGAAATTGAGCATTTTCAAATGCATTGGATGAGAGGTGAACCTGTCATAGTTAGAAATGTACTTGAGAAGACATCTGGTCTTAGTTGGGACCCAATGGTCATGTGGAGGGCTTTTAGAGGTGCAACAAAAGTACTAAAAGAAGATGCTTTGAGTGTTAAGGCCATTGATTGCTTCGATTGGTGTGAGGTTCAGATTAATATTTTCCAGTTTTTTAAGGGCTACTTACAAGGTCGAAGACATAAGAGTGGGTGGCCAGAGATGTTGAAGCTGAAGGACTGGCCTCCATCAAATTCGTTTGATGAGTGTTTGCCTAGGCATGGTGCTGAATTTATTGCTATGCTCCCTTATAGTGATTACACGAACCCAAAATCTGGTTTATTGAATCTCGCTACAAAGCTTCCTGATGTTTTGAAGCCAGACCTGGGACCAAAAACATACATCGCTTATGGGTCTTTGGAAGAACTTGGTAGAGGCAATTCGGTGACAAAGCTGCATTGCGACATTTCAGATGCGGTAAACGTATTAACACACACAGCCAAAGTGAATATTACCCCATTGCAAAGCAAAATCATGAACAAATTGCAGAAGAAATATGAAGCTGAGGATTTGCTGGAGCTCTATGGTGGGGCACATGATGCATCGGACACAACTGGGAAAGAAACAACAGAACAATCTCAGAAAGATGAAACCATGGATTGTGTATATTCTGCAAAAGAGAACACTGTTGGGATTGACTCTTTGTTTCTAGGAAGCCTAAATGAGAAAGAAGAGAAACACAGTGAGCAAGAAGATAGGAGGACCTTGCCCTTATTAGATTCCATGGTGATGGTGAATTGTGAAAAGCAATCTGTTGGAGATTTGAATACAGAGTTTCAGATTTGTGACCTTGAAAAGCATGAATCCAACTTGTCATTGCTAGAAAAAGATTGTGGGATCACACATTTTTGGTCTGGTAATGGATTTGATGCCAAAAATGCAAGAACTGAGAGAGGTCTGTGCAATCAAGAATATTTTCATCTTTCTAATGAAAAAGCAGAGATGAGGTTTGTCAGTGAAAAGAGTCCTTTGGAAGCAACCTTTTCAGGAAACGAAGCAAATCATTCAGAATCAATGAAGCCTGGTTCTTCCAATGTTAGAGATTCCGTTCAAAGCAATGACCATTCAGAGGTTGCATATGGAGGTGCTGTTTGGGACATTTTTCGTAGGCAGGATGTACCCAAGTTAATTGAATTCTTGCGGAAGCATCAGAAAGAATTTCGCCATATCAATAATCTTCCTGTGGATTCGGTTATTCATCCCATTCATGACCAGACCCTTTATCTGACTGAGAGGCATAAGAAGCAACTGAAGGAGGAGTACAATGTTGAACCTTGGACATTTGAGCAATACCTTGGTGAGGCTGTGTTCATTCCTGCAGGATGCCCACACCAAGTGAGAAATAGACAGTCATGCATCAAAGTGGCCCTCGACTTTGTATCCCCCGACAATGTTCAAGAATGCATCCGGTTGACTGAGGAGTTCCGCCTGCTTCCAAAAGACCATAGGGCTAAGGAAGATAAATTGGAGGTAAAGAAGATGGCATTATACGCTGTAAATGTTGCTGTAGATGAAGCGAAAAATCTGATCTCAAAGCTTGAGTAA 5715 46.82 MEDERCRRRGSPNWRCSERALPGKTLCEKHLFCQLIRNRVKTARLAEGRDGEVGRPSGKQKLAAAGEEMVGGGGKEDRGFSGEILAAGEGGGGEVVGGGEMPEGFGGGMWGWFGGDEGGNDGNALGSGGVMGGSAGDGNGREVDGGGVGERGVASGNWATGRGNGGGVVESGGDGDWVSSGGIGGCSREEAGGNGSGDVRLIESLAGHSGGNEGGGEEVVKGGEDSGRAAGGGGLVGYPKEVTGGIGGNSGGSGGGIGGIESRSDGNGHGDDVGEKKKRRGRPRGSKTRRKGEEVPGQSRESTGGNGGGNDGNGCNASGNIGGDEIVVLKKRKLGRPKGSKTRRNVIDGEIVELPIGNWGGSEVIGGLSSGNGRGEIEGTGDLSGGSGRGSGEGIGGLPGGDGSGGEIMVKRRKLGRPKGSNTRRRIPDGRELQVWAGETVENDGLALDLEGNRWKSGAFHGGNNGEGWKVKHGRGRPKGWKKKGRKRKVFYGGELRALEGVKKRGRKRKIVDGEELWDLKGLEKRGRKGGIFYGKELQGSSCEARMVDLLATLQSFAPYSGAVLAEYIKKQYAAITSVPSKQKVWRQPDLAKMVGLLATLRDVVPYRGEVLAENFLYFKWRSSISALEYLAPCRGGVLAEYFMYRERSSSIPYDDIYKCEFDEAPLVTEEIQDQSVQGIRVNEGPSHSEGIGVGEGPSSTEGIQGQYGGAAGGNDGGKLGAKEFLGGFGAFARQKDGGYGFSRLKNKCRRLKGSNNGEEIGGWSGEASRENGPQKEIQGWSSEACCRNDGDEMVSLRGRCDRPNSSEDWMNELNRSGGATCTIDRRSEIISSEGKCGWPQVIENKRTILAAEQDGIIPFEVTGWNDMGDETEGLENKKSGLIAIEDRGLPGEVIGRDEKPNEIFRQKAKRGRPKGSKNRIPCIPKEEQSQATASNFLGGNNSGDVNISWKRKPGRPKGSKNKKVILNGEALNKIPMLNQEHQMPVSKIEEDLNKEGSLQVEYVRDCGNAQMSNGELLTDTGNVHKRPRGRPKKLKDHRGESNCIKEGKFNENGLANSGLSDASNGKREQRSLMCHQCLRHAKSGVVVCSSCKKKRYCYECLAKWYPEKTREDIRNACPFCRCICNCRMCLKQDLVVMTGHGEADTNIKLQKLLYLLDRTLPLLRHIHGEQSSEIHVEAQIRGAQLTEEDIMRSILDKDDRVYCDNCNTSIVNLHRSCPNPDCSYDLCLTCCRELRKGLQPEVKGRIPAHDERYGWEMNMDGSIPCPPKARGGCGTETLELRRIFEPNWVDHLIKSAEDLTMNFGSPDIDFSQGCSLCLPTASTGSGEKHCEVRRAAFRENSHDDFLYCPNSACLGDNEIEHFQMHWMRGEPVIVRNVLEKTSGLSWDPMVMWRAFRGATKVLKEDALSVKAIDCFDWCEVQINIFQFFKGYLQGRRHKSGWPEMLKLKDWPPSNSFDECLPRHGAEFIAMLPYSDYTNPKSGLLNLATKLPDVLKPDLGPKTYIAYGSLEELGRGNSVTKLHCDISDAVNVLTHTAKVNITPLQSKIMNKLQKKYEAEDLLELYGGAHDASDTTGKETTEQSQKDETMDCVYSAKENTVGIDSLFLGSLNEKEEKHSEQEDRRTLPLLDSMVMVNCEKQSVGDLNTEFQICDLEKHESNLSLLEKDCGITHFWSGNGFDAKNARTERGLCNQEYFHLSNEKAEMRFVSEKSPLEATFSGNEANHSESMKPGSSNVRDSVQSNDHSEVAYGGAVWDIFRRQDVPKLIEFLRKHQKEFRHINNLPVDSVIHPIHDQTLYLTERHKKQLKEEYNVEPWTFEQYLGEAVFIPAGCPHQVRNRQSCIKVALDFVSPDNVQECIRLTEEFRLLPKDHRAKEDKLEVKKMALYAVNVAVDEAKNLISKLE* 1905
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 21915588 21926695 + Vvi16g1040 Vvi16g1040 778689

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1040 1904 MobiDBLite consensus disorder prediction 682 712 - -
Vvi16g1040 1904 MobiDBLite consensus disorder prediction 1718 1742 - -
Vvi16g1040 1904 Gene3D Cupin 1351 1651 - -
Vvi16g1040 1904 Gene3D Cupin 1707 1875 - -
Vvi16g1040 1904 Pfam JmjC domain, hydroxylase 1745 1849 IPR003347 -
Vvi16g1040 1904 MobiDBLite consensus disorder prediction 934 948 - -
Vvi16g1040 1904 SMART AT_hook_2 502 514 IPR017956 GO:0003677
Vvi16g1040 1904 SMART AT_hook_2 908 920 IPR017956 GO:0003677
Vvi16g1040 1904 SMART AT_hook_2 951 963 IPR017956 GO:0003677
Vvi16g1040 1904 SMART AT_hook_2 472 484 IPR017956 GO:0003677
Vvi16g1040 1904 SMART AT_hook_2 412 424 IPR017956 GO:0003677
Vvi16g1040 1904 SMART AT_hook_2 277 289 IPR017956 GO:0003677
Vvi16g1040 1904 SMART AT_hook_2 1026 1038 IPR017956 GO:0003677
Vvi16g1040 1904 SMART AT_hook_2 331 343 IPR017956 GO:0003677
Vvi16g1040 1904 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 30 1242 IPR045109 GO:0032454|GO:0033169
Vvi16g1040 1904 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 1255 1904 IPR045109 GO:0032454|GO:0033169
Vvi16g1040 1904 MobiDBLite consensus disorder prediction 1568 1587 - -
Vvi16g1040 1904 Pfam WRC 2 31 IPR014977 -
Vvi16g1040 1904 MobiDBLite consensus disorder prediction 154 322 - -
Vvi16g1040 1904 SMART cupin_9 1461 1866 IPR003347 -
Vvi16g1040 1904 MobiDBLite consensus disorder prediction 934 962 - -
Vvi16g1040 1904 PANTHER ENBP1 PROTEIN 1255 1904 - -
Vvi16g1040 1904 PANTHER ENBP1 PROTEIN 30 1242 - -
Vvi16g1040 1904 MobiDBLite consensus disorder prediction 1014 1039 - -
Vvi16g1040 1904 MobiDBLite consensus disorder prediction 369 430 - -
Vvi16g1040 1904 ProSiteProfiles JmjC domain profile. 1480 1866 IPR003347 -
Vvi16g1040 1904 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 1070 1141 IPR018866 -
Vvi16g1040 1904 PRINTS AT-hook-like domain signature 908 918 IPR017956 GO:0003677
Vvi16g1040 1904 PRINTS AT-hook-like domain signature 949 960 IPR017956 GO:0003677
Vvi16g1040 1904 PRINTS AT-hook-like domain signature 1024 1034 IPR017956 GO:0003677
Vvi16g1040 1904 MobiDBLite consensus disorder prediction 756 779 - -
Vvi16g1040 1904 MobiDBLite consensus disorder prediction 299 317 - -
Vvi16g1040 1904 ProSiteProfiles Zinc finger RING-type profile. 1075 1122 IPR001841 -
Vvi16g1040 1904 ProSiteProfiles WRC domain profile. 1 44 IPR014977 -
Vvi16g1040 1904 SUPERFAMILY Clavaminate synthase-like 1360 1897 - -
Vvi16g1040 1904 MobiDBLite consensus disorder prediction 265 279 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1040 K15601 KDM3; [histone H3]-dimethyl-L-lysine9 demethylase [EC:1.14.11.65] - vvi:100247074 3020.72
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi15g679 Vvi16g1040 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g1040 . . . . . . . Bma14g02007 . . . . . . . . . . . . . . . . . . . . . . . Cone1ag0983 . . . . . . . . Blo09g00027 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004873 1 3 1 1 0 1 1 0 1 1 1 0 1 1 1 1 1 3 0 1 1 1 1 1 1 1 1 8 2 2 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14111 PF02373 JmjC 5.20E-16 CL0029 Vvi TR