Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1041 ATGTACCCACCAATCCACCAGTGCCACAACGGACACACCCTGTGCTCTACCTGTAAAACAAGGGTTCACAATAGGTGCCCTACTTGTAGACAGGAGCTTGGAGATATTAGGTGCTTAGCACTGGAGAAGGTGGCTGAATCTCTTGAATTGCCTTGCAAGTATTACTCCTTGGGCTGCCCGGAGATATTTCCTTATTACAGCAAACTCAAGCATGAGGCAGTATGCAACTTCAGACCATACAATTGCCCATATGCTGGATCCGAGTGCTCTGTTGTTGGGGACATTCCTTTCTTAGTTTCCCATCTCAGGGATGATCACAAGGTGGACATGCACACTGGATGTACATTTAACCATCGATATGTAAAATCCAATCCCCGTGAAGTAGAAAATGCTACCTGGATGCTAACAGTCTTCCATTGTTTTGGTCAATATTTTTGCCTTCACTTCGAAGCCTTTCAACTCGGCATGTCCCCTGTATATATGGCATTCCTTCGTTTCATGGGTGATGAGAATGAAGCACGGAACTATGGTTACAGCCTGGAGGTTGGTGCAAATGGAAGGAAACTCATATGGGAGGGTACTCCAAGGAGCATCCGGGATAGCCATAGAAAGGTCAGGGACAGCCATGATGGTCTCATTATCCAAAGAAACATGGCACTTTTCTTCTCCGGTGGGGACAGAAAGGAGCTGAAGCTGAGAGTTACAGGAAGGATATGGAAGGAACAGCAGAATCAAGATGCTGGTGTGTGCATACCCAACCTCTGTAGCTAA 771 46.43 MYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYSLGCPEIFPYYSKLKHEAVCNFRPYNCPYAGSECSVVGDIPFLVSHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMSPVYMAFLRFMGDENEARNYGYSLEVGANGRKLIWEGTPRSIRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQQNQDAGVCIPNLCS* 257
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 21934459 21938446 - Vvi16g1041 Vvi16g1041 778690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1041 256 ProSiteProfiles Zinc finger SIAH-type profile. 47 107 IPR013010 GO:0008270
Vvi16g1041 256 PANTHER OS05G0238200 PROTEIN 1 247 - -
Vvi16g1041 256 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 1 247 - -
Vvi16g1041 256 Pfam Seven in absentia protein family 36 235 IPR018121 GO:0005737|GO:0006511|GO:0007275
Vvi16g1041 256 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 100 235 IPR008974 GO:0005515
Vvi16g1041 256 CDD Sina 108 236 - -
Vvi16g1041 256 SUPERFAMILY TRAF domain-like 47 239 - -
Vvi16g1041 256 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 42 99 IPR013083 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi15g684 Vvi16g1041 ECH
Vvi15g683 Vvi16g1041 ECH
Vvi2g154 Vvi16g1041 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1041 K04506 - vvi:100252009 556.984