Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi16g1041 | ATGTACCCACCAATCCACCAGTGCCACAACGGACACACCCTGTGCTCTACCTGTAAAACAAGGGTTCACAATAGGTGCCCTACTTGTAGACAGGAGCTTGGAGATATTAGGTGCTTAGCACTGGAGAAGGTGGCTGAATCTCTTGAATTGCCTTGCAAGTATTACTCCTTGGGCTGCCCGGAGATATTTCCTTATTACAGCAAACTCAAGCATGAGGCAGTATGCAACTTCAGACCATACAATTGCCCATATGCTGGATCCGAGTGCTCTGTTGTTGGGGACATTCCTTTCTTAGTTTCCCATCTCAGGGATGATCACAAGGTGGACATGCACACTGGATGTACATTTAACCATCGATATGTAAAATCCAATCCCCGTGAAGTAGAAAATGCTACCTGGATGCTAACAGTCTTCCATTGTTTTGGTCAATATTTTTGCCTTCACTTCGAAGCCTTTCAACTCGGCATGTCCCCTGTATATATGGCATTCCTTCGTTTCATGGGTGATGAGAATGAAGCACGGAACTATGGTTACAGCCTGGAGGTTGGTGCAAATGGAAGGAAACTCATATGGGAGGGTACTCCAAGGAGCATCCGGGATAGCCATAGAAAGGTCAGGGACAGCCATGATGGTCTCATTATCCAAAGAAACATGGCACTTTTCTTCTCCGGTGGGGACAGAAAGGAGCTGAAGCTGAGAGTTACAGGAAGGATATGGAAGGAACAGCAGAATCAAGATGCTGGTGTGTGCATACCCAACCTCTGTAGCTAA | 771 | 46.43 | MYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYSLGCPEIFPYYSKLKHEAVCNFRPYNCPYAGSECSVVGDIPFLVSHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMSPVYMAFLRFMGDENEARNYGYSLEVGANGRKLIWEGTPRSIRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQQNQDAGVCIPNLCS* | 257 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
16 | 21934459 | 21938446 | - | Vvi16g1041 | Vvi16g1041 | 778690 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi16g1041 | 256 | ProSiteProfiles | Zinc finger SIAH-type profile. | 47 | 107 | IPR013010 | GO:0008270 | |
Vvi16g1041 | 256 | PANTHER | OS05G0238200 PROTEIN | 1 | 247 | - | - | |
Vvi16g1041 | 256 | PANTHER | E3 UBIQUITIN PROTEIN LIGASE SIAH | 1 | 247 | - | - | |
Vvi16g1041 | 256 | Pfam | Seven in absentia protein family | 36 | 235 | IPR018121 | GO:0005737|GO:0006511|GO:0007275 | |
Vvi16g1041 | 256 | Gene3D | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 100 | 235 | IPR008974 | GO:0005515 | |
Vvi16g1041 | 256 | CDD | Sina | 108 | 236 | - | - | |
Vvi16g1041 | 256 | SUPERFAMILY | TRAF domain-like | 47 | 239 | - | - | |
Vvi16g1041 | 256 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 42 | 99 | IPR013083 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Vvi15g684 | Vvi16g1041 | ECH | |
Vvi15g683 | Vvi16g1041 | ECH | |
Vvi2g154 | Vvi16g1041 | ECH |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi16g1041 | K04506 | - | vvi:100252009 | 556.984 |