Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1042 ATGGCCGCTGCACTGAGGTCGAAATCGTCTAGAGAAACGGCCTTGTTAACATTCTCTCAGTTCAGATACTTCATCTTGAATCATATGCATGCGGGTCGTTTGCCCAATTCCTATATTTCCCACAAACCCAATTGCGACCATTGCTTTACGCATTCCCACACACCCTACCACTTCACCTCATTCAAACCCGTGTCTCTGCGTGGTGAACTTGTCGATAAGGGTCTTGAGTTCTTCGATAATCAGAGGTTTTCGAAGGTGGGTTTTAGTACGAATGAGAGTAAAAAATTGAGCAGGGATACTATTTTGAATTCTTTTGGGGACCCGCCGGAGGTTTGGTCCGGCGACGGAATTGTGGTCCGGCAGGGGGGATCAGGTTCGAATTTGGTCCGTGGGGGCGGTGGGGCAGGAGCGAACGGGGGAGCAGGTAGTGGGTTCGGTTCCAATTCAAAGGACGAGTCTTGGGGAGGATCAAATTTGGGCCACAATTTCCCAACCCCGAAAGAGATCTGTAGAGGATTGGATAAGTTTGTGATTGGGCAGGAGAGAGCGAAAAAGGTGCTCTCTGTGGCAGTATATAATCATTATAAGCGGATCTATCATCAGTCCCTCCAAAAGTGGCCTGCAGAAGATACAAGTGATGACAAAGCAGAGGCCACGGATAATGATTCAGTGGAACTCGAGAAAAGTAACATTCTTCTAATGGGACCGACTGGCTCAGGGAAGACATTACTTGCCAAAACCTTGGCACGGTTTGTGAATGTTCCCTTTGTTATTGCAGATGCCACTACACTCACTCAGGCAAGATATGTTGGGGAAGATGTGGAATCTATATTATACAAGCTCCTCATGGTTGCTGACTATAATGTAGCAGCTGCCCAGCAGGGCATCGTTTACATTGATGAAGTTGACAAAATCACAAAGAAGGCTGAGAGCCTCAATCTTAGCAGAGATGTATCAGGGGAGGGTGTCCAACAGGCTTTACTAAAAATGCTGGAAGGAACAGTTGTGAACGTCCCAGAAAAGGGAGCTCGAAAGCACCCCAGAGGTGACAACATTCAGATTGACACAAAGGACATTCTCTTCATATGTGGGGGTGCCTTCATTGATCTAGAGAAAACAATCTCTGAAAGACGCCAAGATTCTTCTATTGGGTTTGGTGCACCAGTACGTGCAAACATGAGAACTGGTGGTCCGACAGATGCTGCTGTGGCATCATCATTATTGGAGACTGTTGAAAGCAGTGATCTTATTTCATACGGTTTAATACCTGAATTTGTTGGGCGATTTCCAATCCTTGTTAGTTTGTCTGCTCTCACTGAGAACCAACTTGTTGAGGTCCTAACAGAACCGAAAAATGCTCTGGGGAAGCAGTACAAGAAGATGTTCCAAATGAATGGAGTCAAGCTGCATTTCACAAAAAATGCTCTGAGATTAATTTCTAGAAAGGCAATGTCCAAAAACACGGGTGCTCGAGGCTTAAGGTCCATATTAGAGAATATTTTGATGAATGCGATGTATGAGATCCCAGATGTGAGAACAGGAAATGATATCATTGATGCTGTAGTTGTTGATGATGAGGCTGTTGGCTCTGATGGACACGGATTTGGAGCCAAAATACTTTACGGAAAGGGTGCACTGGACTGCTATCTTTCACAACACAAATTAAAGGAGACAGAAACACCCATGGAGGGCTCTTCTGATGGTGAAGCCGAGGCAGAGGCAGAAATTCCTTCCATTGTCGCCAGCATGTAA 1752 45.66 MAAALRSKSSRETALLTFSQFRYFILNHMHAGRLPNSYISHKPNCDHCFTHSHTPYHFTSFKPVSLRGELVDKGLEFFDNQRFSKVGFSTNESKKLSRDTILNSFGDPPEVWSGDGIVVRQGGSGSNLVRGGGGAGANGGAGSGFGSNSKDESWGGSNLGHNFPTPKEICRGLDKFVIGQERAKKVLSVAVYNHYKRIYHQSLQKWPAEDTSDDKAEATDNDSVELEKSNILLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQARYVGEDVESILYKLLMVADYNVAAAQQGIVYIDEVDKITKKAESLNLSRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFIDLEKTISERRQDSSIGFGAPVRANMRTGGPTDAAVASSLLETVESSDLISYGLIPEFVGRFPILVSLSALTENQLVEVLTEPKNALGKQYKKMFQMNGVKLHFTKNALRLISRKAMSKNTGARGLRSILENILMNAMYEIPDVRTGNDIIDAVVVDDEAVGSDGHGFGAKILYGKGALDCYLSQHKLKETETPMEGSSDGEAEAEAEIPSIVASM* 584
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 21939675 21947283 - Vvi16g1042 Vvi16g1042 778691

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1042 583 Gene3D - 157 436 IPR027417 -
Vvi16g1042 583 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED 1 583 - -
Vvi16g1042 583 SMART AAA_5 227 389 IPR003593 -
Vvi16g1042 583 MobiDBLite consensus disorder prediction 558 583 - -
Vvi16g1042 583 TIGRFAM clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX 161 525 IPR004487 GO:0005524|GO:0006457|GO:0051082|GO:0140662
Vvi16g1042 583 SMART ClpB_D2_small_2 438 535 IPR019489 -
Vvi16g1042 583 PANTHER CLP PROTEASE REGULATORY SUBUNIT CLPX1, MITOCHONDRIAL 1 583 - -
Vvi16g1042 583 MobiDBLite consensus disorder prediction 130 153 - -
Vvi16g1042 583 Pfam AAA domain (Cdc48 subfamily) 227 431 IPR003959 GO:0005524|GO:0016887
Vvi16g1042 583 CDD AAA 228 332 - -
Vvi16g1042 583 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 163 521 IPR027417 -
Vvi16g1042 583 Pfam C-terminal, D2-small domain, of ClpB protein 438 507 IPR019489 -
Vvi16g1042 583 Gene3D - 437 536 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1042 K03544 clpX, CLPX; ATP-dependent Clp protease ATP-binding subunit ClpX - vvi:100264001 1093.18
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g1042 . . . . . . Bma10g01303 . . Cmo18g01359 . . . . . . . Bhi01g01488 Tan01g0095 . . . . . . . . . . . . . . Cone14ag0011 . . . . . . . . . . . . . . . . Cma16g00047 . . Car18g01245 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001359 1 5 2 3 1 2 5 2 1 2 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 3 2 3 4 3 75