Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1046 ATGCAGGACTCCGATATTTCGGCGAATCAGGATAGTACCGGATTTCCGAAATGGCTGACTCGGAGGGAGAGATCCTTACTGCAAATGCCGGTTCCGGCAATACAGGCCGATATTATCGTTTCGCAAGATGGAAACGGCACTTACAAGACGATTACGGAGGCGATTAAGAAGGCGCCTGAGTACAGTAGTCGCCGGACGATTATTTACGTGAAGGCGGGAAGGTACGAGGAGAATAATTTAAAGGTTGGGAGGAAGAAGACTAATTTGATGTTTATAGGTGACGGGAAGGGCAAAACTATAATTACCGGTGGGAAGAGCGTCTTCAACAATCTTACAACGTTCCACACCGCGTCCTTCGCTGCTACAGGAGCTGGTTTCATTGCCAGAGACATGACCTTTGAGAATTGGGCTGGGCCAGGTAAGCACCAGGCCGTGGCACTCCGGGTCGGGGCCGACCATGGTGTTGTCTACCGGTGCAACATTATTGGCTACCAGGACACCCTATACGTGCACTCGCAACGTCAATTCTTCCGAGAATGTGACATATACGGAACCGTAGACTTCATCTTTGGCAATGCGGCCGTAGTTTTCCAAAACTGCAGCCTATATGCCCGAAAGCCCATGGCCCAACAAAAGAACACAATCACAGCCCAAAACCGAAAAGACCCTAACCAAAACACCGGAATCTCAATCCATGCATGCCGGATTCTCCCCGCTGGCGACCTTGCACCAGTCAAGGGGAGCTTCCCAACGTACCTTGGGCGGCCGTGGAAGTTGTACTCGAGAACCGTGTACATGCTTTCGTACATGGGCGATCACATCCACCCTAAGGGTTGGCTAGAGTGGAATACCACATTTGCCTTGGACACACTTTACTACGGCGAGTACATGAATTATGGGCCGGGCGGGGCCGTGGGCCAGCGCGTGAACTGGCCCGGGTACCGGGTCATAACGTCGGTGGTGGAGGCGACGAAATTCACCGTCGGACAGTTCATTTACGGTTCGTCTTGGCTGCCGTCGACTGGCGTGGCCTTCTTGGCCGGCCTATCGACTTTGTTGAGGAAAAAGAAAAAAGTGAAGTTGAATAGGATTTGCGTGTTGGTGTCGGTGTCGGTGTCGGTGGGTTTTGAAGACAATAAATATAAGAGCTACTGGATGCCGACCCATGATGCCATTTATTGA 1182 51.61 MQDSDISANQDSTGFPKWLTRRERSLLQMPVPAIQADIIVSQDGNGTYKTITEAIKKAPEYSSRRTIIYVKAGRYEENNLKVGRKKTNLMFIGDGKGKTIITGGKSVFNNLTTFHTASFAATGAGFIARDMTFENWAGPGKHQAVALRVGADHGVVYRCNIIGYQDTLYVHSQRQFFRECDIYGTVDFIFGNAAVVFQNCSLYARKPMAQQKNTITAQNRKDPNQNTGISIHACRILPAGDLAPVKGSFPTYLGRPWKLYSRTVYMLSYMGDHIHPKGWLEWNTTFALDTLYYGEYMNYGPGGAVGQRVNWPGYRVITSVVEATKFTVGQFIYGSSWLPSTGVAFLAGLSTLLRKKKKVKLNRICVLVSVSVSVGFEDNKYKSYWMPTHDAIY* 394
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 21975852 21979103 - Vvi16g1046 Vvi16g1046 778695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1046 393 SUPERFAMILY Pectin lyase-like 32 348 IPR011050 -
Vvi16g1046 393 ProSitePatterns Pectinesterase signature 2. 182 191 IPR033131 -
Vvi16g1046 393 PANTHER PECTINESTERASE 10 349 - -
Vvi16g1046 393 PANTHER PECTINESTERASE 10 349 - -
Vvi16g1046 393 Gene3D - 31 349 IPR012334 -
Vvi16g1046 393 Pfam Pectinesterase 37 334 IPR000070 GO:0030599|GO:0042545
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1046 - - vvi:100258861 713.375