Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1047 ATGATGAAGTACTATTCTTTTGTTTTTTGCATTGCCTTTTCATTTTGGTTCAGGATCTGCCTGGCAGACAGTGATAATCTTCAGGACGCTTGTCCTACAGCTACAACTGGACAGCAGCAAACTGTCTTCTTTAACGGCCTTCCTTGCAAAAATCCAACCAACATCATTGCTTCCGACTTCAAAACATCAAAACTGAATCACGGTGGCGATACTGACAACTTCTTCCGTTCATCCACCACCCTCATCACTGCCGCAGATTTTCCAGGCCTAAATACTCTTGGCCTCTCAATTGCCAGAACCGACCTGGATGTGGATGGCATGGTCACGCCTCATGCTCACCCAAGGGCTTCTGAGATGTTCTTCGTTAGAAAAGGTGCCGTGGTTGCTGGTTTTATCGATACCAAAAACCAGGTGTTCCAAAAGCTTCTGAAGGAGGGGGATGTGTTTGTATTCCCTCGTGGTTTACTCCACTTTTGTTTGAATGCTGGTTATGAACTCGCTGTTGTTTTCTCGGTGCTCAACAGTCAGAACCCGGGTATGGTGAGCGTCACAGACGCCATGTTTGAACCTGAGTCAGATGCTATCAAGATGCTAATCGGAAGAATAATCTCTACGACATTGGGGGCCAATCTTATGCAAAATGTGACCTTGGATGGATTTCACCATTTATGA 672 45.54 MMKYYSFVFCIAFSFWFRICLADSDNLQDACPTATTGQQQTVFFNGLPCKNPTNIIASDFKTSKLNHGGDTDNFFRSSTTLITAADFPGLNTLGLSIARTDLDVDGMVTPHAHPRASEMFFVRKGAVVAGFIDTKNQVFQKLLKEGDVFVFPRGLLHFCLNAGYELAVVFSVLNSQNPGMVSVTDAMFEPESDAIKMLIGRIISTTLGANLMQNVTLDGFHHL* 224
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 22015152 22015892 - Vvi16g1047 Vvi16g1047 778696

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1047 223 Pfam Cupin 76 187 IPR006045 -
Vvi16g1047 223 ProSitePatterns Germin family signature. 106 119 IPR019780 GO:0030145
Vvi16g1047 223 SUPERFAMILY RmlC-like cupins 37 189 IPR011051 -
Vvi16g1047 223 PRINTS Germin signature 111 131 IPR001929 GO:0030145
Vvi16g1047 223 PRINTS Germin signature 141 161 IPR001929 GO:0030145
Vvi16g1047 223 PRINTS Germin signature 174 189 IPR001929 GO:0030145
Vvi16g1047 223 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 4 9 208 - -
Vvi16g1047 223 SMART Cupin_1_3 63 215 IPR006045 -
Vvi16g1047 223 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 9 208 - -
Vvi16g1047 223 CDD cupin_OxOx 23 213 - -
Vvi16g1047 223 Gene3D Jelly Rolls 22 205 IPR014710 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1047 - - - vvi:100248580 454.907
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g1047 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .