Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g106 ATGGCCGGTCAATCTGATCCTTACATATCCCTCTTTTCTGCCCAGGAGGTGGAATTTCTTGGCGAAGATGAAATGGTGGAGATTGTTCCCAATATGAGAATGGATCCCCTGAATTTGATCTGTGGGGATTTTGGGCCTTTCAGGCCACAAATAGCTACTCAAGTTCCGTTGTGGCTTGCAGTGGCTTTGAAGAAACGAGGGAAATGCACCATTCGGCCCCCTGAATGGATGTCAGTTGATAAGTTGACACAGGTTTTGGAAGCAGAGCGAAACTCTCTAAGAGAATTTCAGCCACTTCCATTCCATTATGTTGAAATCGCAAGACTTCTTTCTGACCATGCACGTGATGACATTCCTGATGTTTATATGGTAAGGTCTCTCATTGAAGACATCAGGAATGTAAGGTTTCATAAAGTTGAGACTGGGTTAGAGACAATCCATGAGCGCACACATGCAGTGAAGCTTAAAAATTTATCTGCGATGGAAGCAAATATAGTGCGCCCATTTGTTGTGAGAGCCCTGCAGGCATTTTATAAGCACGATAGTCCAGAGATGATACCACAACCAGATACCACGGCTATTAGAAGGCGGCAAGTAGCTGATCGTGGACCAAAACGGGATCGACGATACTAA 633 44.71 MAGQSDPYISLFSAQEVEFLGEDEMVEIVPNMRMDPLNLICGDFGPFRPQIATQVPLWLAVALKKRGKCTIRPPEWMSVDKLTQVLEAERNSLREFQPLPFHYVEIARLLSDHARDDIPDVYMVRSLIEDIRNVRFHKVETGLETIHERTHAVKLKNLSAMEANIVRPFVVRALQAFYKHDSPEMIPQPDTTAIRRRQVADRGPKRDRRY* 211
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 1706789 1713203 + Vvi16g106 Vvi16g106 777755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g106 210 MobiDBLite consensus disorder prediction 195 210 - -
Vvi16g106 210 CDD GINS_A_psf2 66 182 - -
Vvi16g106 210 PIRSF GINS_PSF2 2 210 IPR007257 GO:0005634|GO:0006260
Vvi16g106 210 Gene3D - 12 77 - -
Vvi16g106 210 PANTHER DNA REPLICATION COMPLEX GINS PROTEIN PSF2 1 194 IPR007257 GO:0005634|GO:0006260
Vvi16g106 210 Pfam GINS complex protein 53 162 IPR021151 -
Vvi16g106 210 SUPERFAMILY PriA/YqbF domain 12 71 - -
Vvi16g106 210 Gene3D - 78 188 - -
Vvi16g106 210 MobiDBLite consensus disorder prediction 185 210 - -
Vvi16g106 210 SUPERFAMILY GINS helical bundle-like 73 181 IPR036224 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g106 K10733 - vvi:100264816 426.017