Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g114 ATGAGCTTTGAAGATCTTGAATGGGGTCGGACCAGGCCAGGCCAAAGCCCTTTGGCCTTGGCAACAAAGAGGCGGGAAGAGGATGACTCTTCACAGGCCGTGGCGGCAGGCGTTTTCAGAATCAACACTGCCGTTTCGGCCTTCTATCGCCTTGTCAATTCGCTTGGGACTCCCAAGGACACGCTCGAGCTCCGTGAAAAGCTGCACAAGACAAGGCTACATATTGGGCAGTTGGTGAAAGATACTTCAGCAAAGCTTAAGCAAGCAAGTGAAAATGATCAGCATACTGAAGTTAGCGCTAGCAAGAGGATTGCAGATGCTAAGCTTGCAAAAGATTTTCAGGCAGTTCTTAAGGAATTTCAAAAGGCTCAAAGGCTTGCAGTTGAGAGGGAGACGGCATATACTCCTTTTGTTCCCAAGGAAGTTCTGCCATCCAGTTATGATGCACGCGAGCTGGAGATAAGTTCAGGGAAGAATCTCGAGCAACAAGCTGTTCTTTTGGAATCTAGAAGACAGGAAGTTGTGTTATTGGACAATGAGATCACCTTCAATGAAGCCATAATTGAAGAAAGAGAGCAAGGAATCCAAGAAATTCAGCAACAGATTGGTGAGGTGAATGAAATTTTCAAAGATCTGGCTGTACTGGTCCACGGACAAGGAACTATGATTGATGACATTAGTTCAAACATCGAGAAATCCCATGCTGCAACTGGACAAGCTTCTACCCAACTGGAGAAAGCATCCAAACTCCAAAAATCTAATTCCTCTCTGAGCTGTTTGCTGCTGGTGATTTTCGGGGTAATTCTGATCATTGTGGTCATAGTTGTGGTAGCATGA 837 45.64 MSFEDLEWGRTRPGQSPLALATKRREEDDSSQAVAAGVFRINTAVSAFYRLVNSLGTPKDTLELREKLHKTRLHIGQLVKDTSAKLKQASENDQHTEVSASKRIADAKLAKDFQAVLKEFQKAQRLAVERETAYTPFVPKEVLPSSYDARELEISSGKNLEQQAVLLESRRQEVVLLDNEITFNEAIIEEREQGIQEIQQQIGEVNEIFKDLAVLVHGQGTMIDDISSNIEKSHAATGQASTQLEKASKLQKSNSSLSCLLLVIFGVILIIVVIVVVA* 279
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 1769337 1774199 - Vvi16g114 Vvi16g114 777763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g114 278 Gene3D - 178 278 - -
Vvi16g114 278 SMART SynN_4 19 132 IPR006011 GO:0016020
Vvi16g114 278 Pfam Syntaxin-like protein 35 134 IPR006011 GO:0016020
Vvi16g114 278 ProSitePatterns Syntaxin / epimorphin family signature. 191 230 IPR006012 GO:0005484|GO:0006886|GO:0016020
Vvi16g114 278 Gene3D - 20 138 - -
Vvi16g114 278 PANTHER SYNTAXIN 23 277 IPR045242 -
Vvi16g114 278 Pfam SNARE domain 221 273 IPR000727 -
Vvi16g114 278 PANTHER SYNTAXIN-21 23 277 - -
Vvi16g114 278 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 185 247 IPR000727 -
Vvi16g114 278 MobiDBLite consensus disorder prediction 1 27 - -
Vvi16g114 278 SMART tSNARE_6 180 247 IPR000727 -
Vvi16g114 278 SUPERFAMILY t-snare proteins 29 240 IPR010989 GO:0016020|GO:0016192
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi2g709 Vvi16g114 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g114 - K08488 vvi:100249411 466.848