Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi16g114 | ATGAGCTTTGAAGATCTTGAATGGGGTCGGACCAGGCCAGGCCAAAGCCCTTTGGCCTTGGCAACAAAGAGGCGGGAAGAGGATGACTCTTCACAGGCCGTGGCGGCAGGCGTTTTCAGAATCAACACTGCCGTTTCGGCCTTCTATCGCCTTGTCAATTCGCTTGGGACTCCCAAGGACACGCTCGAGCTCCGTGAAAAGCTGCACAAGACAAGGCTACATATTGGGCAGTTGGTGAAAGATACTTCAGCAAAGCTTAAGCAAGCAAGTGAAAATGATCAGCATACTGAAGTTAGCGCTAGCAAGAGGATTGCAGATGCTAAGCTTGCAAAAGATTTTCAGGCAGTTCTTAAGGAATTTCAAAAGGCTCAAAGGCTTGCAGTTGAGAGGGAGACGGCATATACTCCTTTTGTTCCCAAGGAAGTTCTGCCATCCAGTTATGATGCACGCGAGCTGGAGATAAGTTCAGGGAAGAATCTCGAGCAACAAGCTGTTCTTTTGGAATCTAGAAGACAGGAAGTTGTGTTATTGGACAATGAGATCACCTTCAATGAAGCCATAATTGAAGAAAGAGAGCAAGGAATCCAAGAAATTCAGCAACAGATTGGTGAGGTGAATGAAATTTTCAAAGATCTGGCTGTACTGGTCCACGGACAAGGAACTATGATTGATGACATTAGTTCAAACATCGAGAAATCCCATGCTGCAACTGGACAAGCTTCTACCCAACTGGAGAAAGCATCCAAACTCCAAAAATCTAATTCCTCTCTGAGCTGTTTGCTGCTGGTGATTTTCGGGGTAATTCTGATCATTGTGGTCATAGTTGTGGTAGCATGA | 837 | 45.64 | MSFEDLEWGRTRPGQSPLALATKRREEDDSSQAVAAGVFRINTAVSAFYRLVNSLGTPKDTLELREKLHKTRLHIGQLVKDTSAKLKQASENDQHTEVSASKRIADAKLAKDFQAVLKEFQKAQRLAVERETAYTPFVPKEVLPSSYDARELEISSGKNLEQQAVLLESRRQEVVLLDNEITFNEAIIEEREQGIQEIQQQIGEVNEIFKDLAVLVHGQGTMIDDISSNIEKSHAATGQASTQLEKASKLQKSNSSLSCLLLVIFGVILIIVVIVVVA* | 279 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
16 | 1769337 | 1774199 | - | Vvi16g114 | Vvi16g114 | 777763 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi16g114 | 278 | Gene3D | - | 178 | 278 | - | - | |
Vvi16g114 | 278 | SMART | SynN_4 | 19 | 132 | IPR006011 | GO:0016020 | |
Vvi16g114 | 278 | Pfam | Syntaxin-like protein | 35 | 134 | IPR006011 | GO:0016020 | |
Vvi16g114 | 278 | ProSitePatterns | Syntaxin / epimorphin family signature. | 191 | 230 | IPR006012 | GO:0005484|GO:0006886|GO:0016020 | |
Vvi16g114 | 278 | Gene3D | - | 20 | 138 | - | - | |
Vvi16g114 | 278 | PANTHER | SYNTAXIN | 23 | 277 | IPR045242 | - | |
Vvi16g114 | 278 | Pfam | SNARE domain | 221 | 273 | IPR000727 | - | |
Vvi16g114 | 278 | PANTHER | SYNTAXIN-21 | 23 | 277 | - | - | |
Vvi16g114 | 278 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 185 | 247 | IPR000727 | - | |
Vvi16g114 | 278 | MobiDBLite | consensus disorder prediction | 1 | 27 | - | - | |
Vvi16g114 | 278 | SMART | tSNARE_6 | 180 | 247 | IPR000727 | - | |
Vvi16g114 | 278 | SUPERFAMILY | t-snare proteins | 29 | 240 | IPR010989 | GO:0016020|GO:0016192 |
Event-related genes

Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi16g114 | - | K08488 | vvi:100249411 | 466.848 |