Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g130 ATGGCCAATCGAATTGACGACCATGTTTTCAGATCAAAACTCCCTGAAATTCCCATCTCCAACCACCTCCCTCTCCACACCTACTGCTTTGAAAACTACTCCCAATTCGCCGATCGTCCATGCTTGATCGTCGGATCCACCAACAAAACCTACTCCTTTGCAGAAACCCACCTCATTTCTCGCAAAGTCGGAGCTGGGTTCGCCCACCTCGGCCTCAAACAGGGAGACGTCGTCATGATCCTCCTCCAGAACTGCGCCGAATTCGCGTTCTCCTTTCTCGGAGCTTCCATGGTCGGAGCCGTCACCACCACCGCCAACCCCTTCTACACTTCGGCCGAAATTTTCAAGCAGTTGAATGCTTCCAAGGCGAAAATCGTCGTCACGCAGGCGCAGTACGTGGCAAAGATCGGAGAAGGTTTCACCGTCATTACCATCGACGATCCGCCGGAGAACTGCATGCATTTCTCGGTGGTGTCGGAGGCGAACGAGAGCGAACTTCCGGAGGTTTCGATCAACTCCGACGACCCAGTGGCGCTGCCGTTCTCCTCTGGCACTACCGGGCTTCCGAAGGGGGTGGTCCTGACGCACAAGAGCTTGATCACAAGCGTGGCTCAGCAGGTGGACGGCGAGAACCCTAACCTCCACCTGACGCCGGACGACGTCGTTTTGTGTGTGCTGCCGCTGTTCCACATATACTCTCTGAACAGCCTGATCCAGCGCTACCGGGTGTCGGTGGCGGCGGTGGTGCCCCCGCTGGTGCTGGCGCTGGCGAAGAACCCGATGGTGGAGAGCTTCGACCTGAGCTCAATCCGGGTGGTGCTGTCCGGGGCAGCCCCGCTGGGGAAGGAGCTGGAGGCGGCTCTCCGGAGCAGGGTGCCTCAGGCGGTGCTTGGCCAGGGTTATGGAATGACAGAGGCCGGACCGGTGTTATCGATGTGCCTAGCCTTCGCCAAGCAGCCCTTTCCTACTAAGTCCGGCTCGTGCGGCACCGTTGTCCGCAATGCTGAGCTCAAGGTCGTCGACCCTGAGACCGGTTGCTCCCTCGGCCGCAACCAACCGGGCGAGATCTGCATTCGAGGACAACAGATTATGAAAGGATACTTGAACGATCCCGAGGCCACGGCCTCTACCATCGATGTTGACGGTTGGCTACACACCGGTGACATTGGCTATGTTGACGATGATGAAGAGGTGTTCATCGTAGATAGAGTGAAAGAACTCATCAAATTCAAAGGCTTCCAGGTACCGCCTGCTGAGCTTGAGGCCCTTCTGGTGAGTCACCCATCAATTGCTGATGCAGCTGTTGTCCCGCAAAAAGATGATGTTGCAGGTGAAGTTCCTGTTGCATTTGTGGTTAGATCAAACGGGTTTGAACTCACTGAAGAGGCTGTGAAAGAGTTCATATCGAAACAGGTTGTGTTCTACAAAAGACTGCACAAGGTGTACTTTGTTCATGCCATTCCAAAGTCACCATCAGGGAAAATTTTAAGAAAAGACCTCAGAGCTAAACTAGCAGAAAAGACCCCAGAGCCAAACTAG 1539 55.04 MANRIDDHVFRSKLPEIPISNHLPLHTYCFENYSQFADRPCLIVGSTNKTYSFAETHLISRKVGAGFAHLGLKQGDVVMILLQNCAEFAFSFLGASMVGAVTTTANPFYTSAEIFKQLNASKAKIVVTQAQYVAKIGEGFTVITIDDPPENCMHFSVVSEANESELPEVSINSDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLHLTPDDVVLCVLPLFHIYSLNSLIQRYRVSVAAVVPPLVLALAKNPMVESFDLSSIRVVLSGAAPLGKELEAALRSRVPQAVLGQGYGMTEAGPVLSMCLAFAKQPFPTKSGSCGTVVRNAELKVVDPETGCSLGRNQPGEICIRGQQIMKGYLNDPEATASTIDVDGWLHTGDIGYVDDDEEVFIVDRVKELIKFKGFQVPPAELEALLVSHPSIADAAVVPQKDDVAGEVPVAFVVRSNGFELTEEAVKEFISKQVVFYKRLHKVYFVHAIPKSPSGKILRKDLRAKLAEKTPEPN* 513
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 2123298 2128332 + Vvi16g130 Vvi16g130 777779
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g130 512 Pfam AMP-binding enzyme C-terminal domain 419 494 IPR025110 -
Vvi16g130 512 SUPERFAMILY Acetyl-CoA synthetase-like 22 507 - -
Vvi16g130 512 Gene3D - 237 405 IPR042099 -
Vvi16g130 512 Gene3D - 2 236 IPR042099 -
Vvi16g130 512 PANTHER 4-COUMARATE--COA LIGASE 3 8 503 - -
Vvi16g130 512 ProSitePatterns Putative AMP-binding domain signature. 179 190 IPR020845 -
Vvi16g130 512 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 8 503 - -
Vvi16g130 512 Gene3D - 406 508 IPR045851 -
Vvi16g130 512 CDD 4CL 19 500 - -
Vvi16g130 512 Pfam AMP-binding enzyme 236 410 IPR000873 -
Vvi16g130 512 Pfam AMP-binding enzyme 32 234 IPR000873 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g130 K01904 - vvi:100245991 980.319