Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g143 ATGGGCTTCCTTCTTATCCTGGATAGTCTCTTTCTGTACAGTTCTTTAAAGTATTTGATACAAACACGGCAGGCTTCAGTTTCCCTCCTCTTTTCTTTTGAGTACATGATACTCGCAACAACAACTGTGTCAACATTCGTAAAATATGTTTTCTATGTCAGTGACATGCTTATGGAAGGACAATGGGAGAAAAAGGCTGTCTACACCTTTTACTTGGAACTTATACGAGACTTGCTTCACTTGTCTTTGTATCTGTGCTTCTTTCTTGTGATTTTCATGAATTATGGTGTGCCTTTGCACTTGATTCGGGAGCTCTATGAAACATTCCGTAACTTCAGGGTCCGTATTGCTGATTACATTCGTTATAGGAAGATGACTTCAAATATGAATGATCGTTTTCCAGATGCAACGCCTGAAGAACTTGATGCAAGTGATGCAACCTGCATCATTTGTCGTGAGGAGATGGTTACAGCCAAGAAACTAATTTGTGGACATCTTTTTCATATGCATTGTCTCCGTTCATGGTTAGAGCGACAGCATACTTGTCCTACTTGCAGAGCCCTAGTTGTACCCCCTGAAAATGGGACAACTACTGCTGGAGGGCAACATGGGCCACGGTCTGATTTTCATCAAGCAAGTACATCCACACAGGGTTTGACTGGTGATGTAGCAGATGATAATTTGAATTGGCATCGGGCCAGACTCCAAGCTGCTGCTTCAGCTGCCGCAATATATGAAAAATCTTTTGTGTACCCTTCTCCAAATACACTAGTGTGGTCCCCTGGATATGTATCACTCCCCCAGGCATCTGGTGCCACCATGAACTATGGAGATAGACTCAGTGGTGATCTAAACATACCGGGCTCTCAGATGGAAGCTCAGAAGAAATTTCTTGAATACCATATTGAGGTCTTGCAAAACCAGCTCCAACTTCTACAGAAACTATCGAAACCAGAGGAAGGCATGGGCATGGCCCCCACTGCATCATCAGCTGGCAAGGGAAAGGACGTTGCTTCTTCATCTTCTTCTGTTCCAGACTCGGGTCATCATGGAGAAATTGAAGAAACTGATACATAG 1077 43.45 MGFLLILDSLFLYSSLKYLIQTRQASVSLLFSFEYMILATTTVSTFVKYVFYVSDMLMEGQWEKKAVYTFYLELIRDLLHLSLYLCFFLVIFMNYGVPLHLIRELYETFRNFRVRIADYIRYRKMTSNMNDRFPDATPEELDASDATCIICREEMVTAKKLICGHLFHMHCLRSWLERQHTCPTCRALVVPPENGTTTAGGQHGPRSDFHQASTSTQGLTGDVADDNLNWHRARLQAAASAAAIYEKSFVYPSPNTLVWSPGYVSLPQASGATMNYGDRLSGDLNIPGSQMEAQKKFLEYHIEVLQNQLQLLQKLSKPEEGMGMAPTASSAGKGKDVASSSSSVPDSGHHGEIEETDT* 359
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 2283678 2293161 + Vvi16g143 Vvi16g143 777792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g143 358 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 120 193 IPR013083 -
Vvi16g143 358 CDD RING-H2_synoviolin 145 186 - -
Vvi16g143 358 SMART ring_2 148 185 IPR001841 -
Vvi16g143 358 PANTHER ERAD-ASSOCIATED E3 UBIQUITIN-PROTEIN LIGASE HRD1B-LIKE 1 284 - -
Vvi16g143 358 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 1 284 - -
Vvi16g143 358 MobiDBLite consensus disorder prediction 318 358 - -
Vvi16g143 358 Coils Coil 295 315 - -
Vvi16g143 358 MobiDBLite consensus disorder prediction 196 216 - -
Vvi16g143 358 ProSiteProfiles Zinc finger RING-type profile. 148 186 IPR001841 -
Vvi16g143 358 Pfam Ring finger domain 147 186 IPR001841 -
Vvi16g143 358 SUPERFAMILY RING/U-box 128 192 - -
Vvi16g143 358 MobiDBLite consensus disorder prediction 333 347 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g143 K10601 - vvi:100252838 679.093