Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g155 ATGAACCAGGTGGATATTGTGGCATCATTTCAAACCAACTATTTCACTTCAGAAGTTGCTCCTTTTGGTGATTCTTTGGTTGTTCTAGCCTATATTCTTGGAGAAGAAGATGGAGAGAAAGAATTTAGCAGCACCATTCCATCACGCCAGGGAAATGCGCAAAGACCTGAAGTACACATAGTCATATGGAATAATGATGAGCTTGCGACAGATGCCTTGCCTGTACATGGCTTTGAGCATTACAAGGCAAAGGACTATTCCCTTGCTTATGCTCTTTTCACGGGTAGTAACTATGCTGGTGGTCAGTGGAAAAGTTGGGGAGTCGAAAGAATACTCAGTGGAAAAGCTGGAGAGTTGAAAGAATACTCAGTGGACTTACTGCATGCAGAAGGTGTTAAATTTGAAGGTCATGGGCAAATCCAAGAAGCTTTGGCTGCTTATATCAATGCCCTTTTACTAGATCCGGGTTATGTGCCTTGCAAGATCTTGATTGGTGCTCTGTTGTTGAAGATGGGCTCGAAGGCATTTCCTGCTGCGAGAAACCTACTTTCAGATGCATTGAGGATGGAGCCTACCAACCAAATGGCTTGGTACTACCTGGGAATGGCTCACAAAGATGATGGACGAATAGCTGATGCTACAGACTGCTTCCAAGCAGTCTCCAATCTTGAAGAATCCAATCCCCTTATTCCACCCCGGTCCCATGCATGCACGTATCTAGTTGCATGA 729 44.58 MNQVDIVASFQTNYFTSEVAPFGDSLVVLAYILGEEDGEKEFSSTIPSRQGNAQRPEVHIVIWNNDELATDALPVHGFEHYKAKDYSLAYALFTGSNYAGGQWKSWGVERILSGKAGELKEYSVDLLHAEGVKFEGHGQIQEALAAYINALLLDPGYVPCKILIGALLLKMGSKAFPAARNLLSDALRMEPTNQMAWYYLGMAHKDDGRIADATDCFQAVSNLEESNPLIPPRSHACTYLVA* 243
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 2470086 2470815 + Vvi16g155 Vvi16g155 777804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g155 242 SMART tpr_5 194 227 IPR019734 GO:0005515
Vvi16g155 242 SMART tpr_5 124 157 IPR019734 GO:0005515
Vvi16g155 242 SUPERFAMILY TPR-like 115 229 IPR011990 GO:0005515
Vvi16g155 242 Gene3D Tetratricopeptide repeat domain 59 238 IPR011990 GO:0005515
Vvi16g155 242 ProSiteProfiles TPR repeat profile. 194 227 IPR019734 GO:0005515
Vvi16g155 242 PANTHER PROTEIN NPG1 104 235 IPR043376 -
Vvi16g155 242 PANTHER PROTEIN NPG1 104 235 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g155 K20184 K21843 vvi:100267895 217.238