Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g250 ATGGCTACAACCATGACTTCCATTGCTTTCTTCCTCCTCCTCCTCCTCCTCTCATTGTCGGCTGTACTTGCCGACAATGATAATGCACAAATCCCTAGCGATAAAAGTCAACTAGCTCCATGGTTCAGAAATAGCATCCAGAAGTACAAGCTCCGGAGGACGACGCTGGATCCAGCCCTAGTGGAGGCGGAGGACAGCGTAAAAATCATCAAGGTGAGTAAAAGCGGTGGAGGAAACTTCAATACGGTGATGGCGGCAGTCAATAGTGTTCCAGCTGGTAATACTCGGCGCGTGATTATATGGATTGGAGGCGGAGAATATGAAGAGAAAATCAAGATCGATAGGGATAAGCCCTTTATAACATTCTACGGATCACCGGAGGACATGCCAAAGCTGTCATTTGATGGGACGGCAGCCGAGTTCGGGACAGTGGACAGCGCGACGCTCATAGTGGAGTCGGATTACTTCATGGCGGTGAACATAATTGTCATTAACTCGTCCCCAAGGCCGGACGGGAAAAGGAAGGGAGCCCAGGCGGTGGCACTGAGGGTGTCAGGCGATAAGGCCGCGTTTTATAACTGCAGGCTGATCGGTTTTCAGGACACCCTATGTGATGATAGGGGCAGGCATTTTTTCCATGGATGCTACGTTGAAGGCACTGTGGACTACATATTTGGAAGTGGAAAGTCTCTGTATTTGAGCACTGAGCTACATACCAAGGGAGACGGCGGGTTTTCAGTGATCACAGCGCAGGCAAGGAACCTTGAATCGGAGGACAATGGATACTCATTCGTCCACTGCACCTTGTCAGGTACTGGCGGCAACACTTTCTTAGGGCGGGCATGGATGAGTAGACCGAAGGTGGTGTTTTCATACACCTTCATGAGCCCTGTTGTCAGTCCTTTAGGGTGGTCCAATAACATCCACCCTGAACGGGAATCATTGGTTTTCTATGGAGAATACAAGTGTATGGGACCAGGGGCAGACACATCTAAACGATCCAAATTCACCAAGGAACTAGACGATGATGGAGCCACACCCTTCATCACCCTCAACTACATTGATGCTTCAACATGGTTGCTGCCTCCCCCAGGTCTTGCACTCCGTTGA 1110 50.0 MATTMTSIAFFLLLLLLSLSAVLADNDNAQIPSDKSQLAPWFRNSIQKYKLRRTTLDPALVEAEDSVKIIKVSKSGGGNFNTVMAAVNSVPAGNTRRVIIWIGGGEYEEKIKIDRDKPFITFYGSPEDMPKLSFDGTAAEFGTVDSATLIVESDYFMAVNIIVINSSPRPDGKRKGAQAVALRVSGDKAAFYNCRLIGFQDTLCDDRGRHFFHGCYVEGTVDYIFGSGKSLYLSTELHTKGDGGFSVITAQARNLESEDNGYSFVHCTLSGTGGNTFLGRAWMSRPKVVFSYTFMSPVVSPLGWSNNIHPERESLVFYGEYKCMGPGADTSKRSKFTKELDDDGATPFITLNYIDASTWLLPPPGLALR* 370
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 4915537 4917247 + Vvi16g250 Vvi16g250 777899
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g250 369 SUPERFAMILY Pectin lyase-like 69 360 IPR011050 -
Vvi16g250 369 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 35 361 - -
Vvi16g250 369 Gene3D - 65 362 IPR012334 -
Vvi16g250 369 PANTHER PECTINESTERASE 63-RELATED 35 361 - -
Vvi16g250 369 Pfam Pectinesterase 70 355 IPR000070 GO:0030599|GO:0042545
Vvi16g250 369 ProSitePatterns Pectinesterase signature 2. 217 226 IPR033131 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g250 K01051 - vvi:100266527 733.791