Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g251 ATGGCTATGACAGTGATATCCATTGCTTTCTTCCTCCTCGTCCCCCTCTCATCATCGGCTGTACTTGCCGACAATGATAATGCACAAATCCCTAGCGATAAAAGTCAACTAGCTCCATGGTTCAGAAATAGCATCCAGAAGTACAAGCTCCGGAGGACGACGCTGGATCCAGCCCTAGTGGAGGCGGAGGACAGCGTAAAAATCATCAAGGTGAGTAAAAGCGGTGGAGGAAACTTCAATACGGTGATGGCGGCAGTCAATAGTGTTCCAGCCGGTAATACACAACGTGTAATTATATGGATTGGAGGCGGAGTATATGAAGAGAAAATCAAGATCGATAGGAATAAGCCCTTTATAACATTCTACGGATCACCAGAGGACATGCCAAAGCTGTCATTTGATGGGACGGCAGCCAAGTTCGGGACAGTGGACAGCGCGACGCTTATAGTGGAGTCGGATTACTTCATGGCGGTGAACATAATTGTCATTAACTCGTCCCCAAGACCAGACGGAAAAAGAAAGGGAGCCCAGGCGGTGGCACTGAGGGTGTCAGGCGATAAGGCCGCATTTTACAACTGCAGGCTGATCGGTTTTCAGGACACCCTATGTGATGATAGGGGCAGGCATTTTTTCCATGAATGCTACGTTGAAGGCACTGTGGACTACATATTTGGAAGTGGAAAATCTTTGTATTTGAGCACTGAGCTACATACCAAGGGAGACGGCGGATTTTCAGTGATCACAGCGCAGGCAAGGAACCTTGAATGGGAGGACAATGGATATTCATTCGTCCACTGCACCTTGTCAGGTACTGGCGGCAACACTTTCTTAGGGCGGGCATGGATGAGTAGACCGAGGGTGGTGTTTTCATACACCTTCATGAGTTCTGTTGTCAGTCCTTTAGGATGGTCCGATAACGACCAACCTGAACGTGACTCATTGGTTTTCTATGGAGAATACAAGTGTATGGGACCAGCGGCAGACACATCCAAACGACCCAAATTCAGCAAGGAACTAGACGATAATGGAGCCACACCCTTCATCACCCTCAACTACATTGATGCTTCAACGTGGTTGCTTCCTCCCCCAGGCCTTGTACTCCGTTGA 1107 48.51 MAMTVISIAFFLLVPLSSSAVLADNDNAQIPSDKSQLAPWFRNSIQKYKLRRTTLDPALVEAEDSVKIIKVSKSGGGNFNTVMAAVNSVPAGNTQRVIIWIGGGVYEEKIKIDRNKPFITFYGSPEDMPKLSFDGTAAKFGTVDSATLIVESDYFMAVNIIVINSSPRPDGKRKGAQAVALRVSGDKAAFYNCRLIGFQDTLCDDRGRHFFHECYVEGTVDYIFGSGKSLYLSTELHTKGDGGFSVITAQARNLEWEDNGYSFVHCTLSGTGGNTFLGRAWMSRPRVVFSYTFMSSVVSPLGWSDNDQPERDSLVFYGEYKCMGPAADTSKRPKFSKELDDNGATPFITLNYIDASTWLLPPPGLVLR* 369
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 5021887 5023523 - Vvi16g251 Vvi16g251 777900
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g251 368 ProSitePatterns Pectinesterase signature 2. 216 225 IPR033131 -
Vvi16g251 368 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 34 360 - -
Vvi16g251 368 Pfam Pectinesterase 69 354 IPR000070 GO:0030599|GO:0042545
Vvi16g251 368 PANTHER PECTINESTERASE 63-RELATED 34 360 - -
Vvi16g251 368 Gene3D - 64 361 IPR012334 -
Vvi16g251 368 SUPERFAMILY Pectin lyase-like 68 359 IPR011050 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g251 K01051 - vvi:100263101 739.184